Miyakogusa Predicted Gene
- Lj2g3v1705490.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1705490.1 Non Chatacterized Hit- tr|I1JG14|I1JG14_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5264
PE=,78.67,0,RRM_1,RNA recognition motif domain; coiled-coil,NULL;
seg,NULL; RNA-binding domain, RBD,NULL; RRM,RN,CUFF.37730.1
(633 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57778 similar to UniRef100_Q2VCH8 Cluster: RNA bindin... 1247 0.0
gnl|LJGI|TC59104 similar to UniRef100_Q2VCH8 Cluster: RNA bindin... 795 0.0
>gnl|LJGI|TC57778 similar to UniRef100_Q2VCH8 Cluster: RNA binding protein-like
protein; n=1; Solanum tuberosum|Rep: RNA binding
protein-like protein - Solanum tuberosum (Potato),
partial (82%)
Length = 1101
Score = 1247 bits (629), Expect = 0.0
Identities = 632/633 (99%)
Strand = Plus / Plus
Query: 1 atgggagggaagaaggcaaagaaagcgatgcagaagagtttgaaaagggtcactgctgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 atgggagggaagaaggcaaagaaagcgatgcagaagagtttgaaaagggtcactgctgct 142
Query: 61 aaaccctctgatggtcctgattttttgcccttggaaggtggtcctgctcggaaacttccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aaaccctctgatggtcctgattttttgcccttggaaggtggtcctgctcggaaacttccc 202
Query: 121 gtgcagacaccgttggagaataaaggcaccgtcttgtatgtcggtcggatcccacatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtgcagacaccgttggagaataaaggcaccgtcttgtatgtcggtcggatcccacatggg 262
Query: 181 ttctatgagaaggagattgaaggttattttggacaatttggaaccatcaagaggttgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttctatgagaaggagattgaaggttattttggacaatttggaaccatcaagaggttgaga 322
Query: 241 attgccagaaacaaaaagactggaaaatcaagacattttgggttcatagaatttgaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attgccagaaacaaaaagactggaaaatcaagacattttgggttcatagaatttgaatct 382
Query: 301 gctgaggtagcaaaaattgtagctgatactatgcacaattatctactatttgcgcacctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gctgaggtagcaaaaattgtagctgatactatgcacaattatctactatttgcgcacctt 442
Query: 361 ctccaggttcatgtgatgcctccagagcaggttcatccaaacttatggagagggttcaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctccaggttcatgtgatgcctccagagcaggttcatccaaacttatggagagggttcaat 502
Query: 421 taccgttccaagccattggactctgtcgaaattcagcgagagcaacatgacaaggaaaga 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taccgttacaagccattggactctgtcgaaattcagcgagagcaacatgacaaggaaaga 562
Query: 481 acattggaagagcacagaaagttagttgaaaagattgtgagtcgtgataaaaaacgtcgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acattggaagagcacagaaagttagttgaaaagattgtgagtcgtgataaaaaacgtcgt 622
Query: 541 aagaagatagaggaagctggcattgattatgaatgccctgagattgtgggtaacatccag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagaagatagaggaagctggcattgattatgaatgccctgagattgtgggtaacatccag 682
Query: 601 ccagctccaaagaaattaaagtttgaagactga 633
|||||||||||||||||||||||||||||||||
Sbjct: 683 ccagctccaaagaaattaaagtttgaagactga 715
>gnl|LJGI|TC59104 similar to UniRef100_Q2VCH8 Cluster: RNA binding protein-like
protein; n=1; Solanum tuberosum|Rep: RNA binding
protein-like protein - Solanum tuberosum (Potato),
partial (82%)
Length = 948
Score = 795 bits (401), Expect = 0.0
Identities = 571/627 (91%), Gaps = 3/627 (0%)
Strand = Plus / Plus
Query: 10 aagaaggcaaagaaagcgatgcagaagagtttgaaaagggtcactgc---tgctaaaccc 66
|||||||| || ||||||||| | ||||||||||||||||||||||| | ||||||
Sbjct: 133 aagaaggcgaacaaagcgatgaacaagagtttgaaaagggtcactgctattaataaacca 192
Query: 67 tctgatggtcctgattttttgcccttggaaggtggtcctgctcggaaacttcccgtgcag 126
||||| ||||||||||||||||| |||||||||||||||||||| |||||||| | |||
Sbjct: 193 tctgagggtcctgattttttgcctttggaaggtggtcctgctcgtaaacttcctgaacag 252
Query: 127 acaccgttggagaataaaggcaccgtcttgtatgtcggtcggatcccacatgggttctat 186
| ||||||||||||||| |||| ||||||||||| |||||||| || ||||||||||||
Sbjct: 253 aaaccgttggagaataagggcagggtcttgtatgttggtcggattccgcatgggttctat 312
Query: 187 gagaaggagattgaaggttattttggacaatttggaaccatcaagaggttgagaattgcc 246
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 313 gagaaggagattgaaggttattttggacaatttggaaccatcaagagattgagaattgcc 372
Query: 247 agaaacaaaaagactggaaaatcaagacattttgggttcatagaatttgaatctgctgag 306
|||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 373 agaaacaaaacgactggaaaatcaagacattttgggttcatagaattcgaatctcctgag 432
Query: 307 gtagcaaaaattgtagctgatactatgcacaattatctactatttgcgcaccttctccag 366
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 433 gtagcaaaaattgtagctgatactatgcacaattatctactatttgaacaccttctccag 492
Query: 367 gttcatgtgatgcctccagagcaggttcatccaaacttatggagagggttcaattaccgt 426
||||||||||| ||||||||||| |||||| ||| ||||||||||| ||||||||||||
Sbjct: 493 gttcatgtgatacctccagagcatgttcattcaatgttatggagaggattcaattaccgt 552
Query: 427 tccaagccattggactctgtcgaaattcagcgagagcaacatgacaaggaaagaacattg 486
| ||||||||||||||| ||| |||| ||||| |||| |||||||||||||| |||||||
Sbjct: 553 tacaagccattggactcggtccaaatgcagcgggagcgacatgacaaggaaaaaacattg 612
Query: 487 gaagagcacagaaagttagttgaaaagattgtgagtcgtgataaaaaacgtcgtaagaag 546
||||||||||| ||||| || ||||||||| |||| |||||||||||||| ||||| |
Sbjct: 613 gaagagcacaggaagttggtcgaaaagattttgagccgtgataaaaaacgacgtaaaagt 672
Query: 547 atagaggaagctggcattgattatgaatgccctgagattgtgggtaacatccagccagct 606
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 673 atagtggctgctggcattgattatgaatgccctgagattgtgggtaacatccagcctgct 732
Query: 607 ccaaagaaattaaagtttgaagactga 633
||||||||||| |||||||||||||||
Sbjct: 733 ccaaagaaattgaagtttgaagactga 759