Miyakogusa Predicted Gene

Lj2g3v1705470.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1705470.1 tr|Q9M4U6|Q9M4U6_SOLCI Histone H1 variant
OS=Solanum chilense PE=3 SV=1,53.57,9e-19,H15,Histone H1/H5;
Linker_histone,Histone H1/H5; no description,Winged helix-turn-helix
transcriptio,CUFF.37695.1
         (424 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72213 similar to UniRef100_Q9M4U6 Cluster: Histone H1...   817   0.0  

>gnl|LJGI|TC72213 similar to UniRef100_Q9M4U6 Cluster: Histone H1 variant; n=1;
           Solanum chilense|Rep: Histone H1 variant - Solanum
           chilense (Tomato) (Lycopersicon chilense), partial (57%)
          Length = 865

 Score =  817 bits (412), Expect = 0.0
 Identities = 412/412 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  tacgcgatcgcgaaatacatggaggagaagcacaagtcggtgctccctgcgaatttcaag 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tacgcgatcgcgaaatacatggaggagaagcacaagtcggtgctccctgcgaatttcaag 351

                                                                       
Query: 73  aagattctgggtttgcagctgaagaatcaagccgcgaaggggaaactcgtgaagatcaag 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aagattctgggtttgcagctgaagaatcaagccgcgaaggggaaactcgtgaagatcaag 411

                                                                       
Query: 133 gcttcgtacaagctttctggcgcgaagaaggatggcgccggtgctaaggtggcaaaggcc 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcttcgtacaagctttctggcgcgaagaaggatggcgccggtgctaaggtggcaaaggcc 471

                                                                       
Query: 193 aagacagagaagaaggatgctgccgccgctaaggtcgcaccgcgccagaaacgaaccagg 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aagacagagaagaaggatgctgccgccgctaaggtcgcaccgcgccagaaacgaaccagg 531

                                                                       
Query: 253 gccgtgacagctgtgaccgctgccgctccgaagagcaagaagagcgaggcggtggttaag 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gccgtgacagctgtgaccgctgccgctccgaagagcaagaagagcgaggcggtggttaag 591

                                                                       
Query: 313 aagggtgggatgaagaagaagacgaggaaggtgtctacgcttgcgaagccgaaacagcca 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aagggtgggatgaagaagaagacgaggaaggtgtctacgcttgcgaagccgaaacagcca 651

                                                               
Query: 373 aagtccattaggtctccttcaaagagggctaggaaagctactgctgcgtgat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aagtccattaggtctccttcaaagagggctaggaaagctactgctgcgtgat 703