Miyakogusa Predicted Gene

Lj2g3v1695250.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1695250.2 tr|B9IB18|B9IB18_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_247318
PE=4,49.54,4e-19,FAR1,FAR1 DNA binding domain,CUFF.37673.2
         (378 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO038958 similar to UniRef100_Q2HRZ3 Cluster: FAR1; Pol...    52   3e-06

>gnl|LJGI|GO038958 similar to UniRef100_Q2HRZ3 Cluster: FAR1; Polynucleotidyl
           transferase, Ribonuclease H fold; n=1; Medicago
           truncatula|Rep: FAR1; Polynucleotidyl transferase,
           Ribonuclease H fold - Medicago truncatula (Barrel
           medic), partial (26%)
          Length = 900

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 88  tctggtaaatgggttgttacaaagtttgtaaaggagcacacacatcctct 137
           ||||| ||||||||||||||||  ||||||||||| ||||  ||||||||
Sbjct: 591 tctggaaaatgggttgttacaagatttgtaaaggatcacaaccatcctct 542