Miyakogusa Predicted Gene
- Lj2g3v1695250.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1695250.1 tr|I1LYK3|I1LYK3_SOYBN Structural maintenance of
chromosomes protein OS=Glycine max PE=3 SV=1,76.56,0,no
description,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; Smc hinge domain,SMC,CUFF.37673.1
(3573 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58572 similar to UniRef100_A7Q1S8 Cluster: Chromosome... 860 0.0
gnl|LJGI|TC73196 similar to UniRef100_A7Q1S8 Cluster: Chromosome... 618 e-176
gnl|LJGI|TC73522 homologue to UniRef100_A7Q1S8 Cluster: Chromoso... 242 1e-62
gnl|LJGI|TC75949 similar to UniRef100_A7Q1S8 Cluster: Chromosome... 236 8e-61
gnl|LJGI|BW614418 similar to UniRef100_A7Q1S8 Cluster: Chromosom... 141 3e-32
>gnl|LJGI|TC58572 similar to UniRef100_A7Q1S8 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 1408
Score = 860 bits (434), Expect = 0.0
Identities = 521/550 (94%)
Strand = Plus / Plus
Query: 2882 ataaaattgaggcagaatttaaggaaaaaatcagtacgttaatatctgagattgaaagaa 2941
|||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 394 ataaaattgaggtagaatttaagcaaaaaatgggtacgctaatatctgagattgaaagaa 453
Query: 2942 cagcaccaaatttgaaggcattggagcaatatgaggttctgctagaaaaagaaagaggtg 3001
||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 454 cagcaccaaatttgaaggcattggaccagtatgaggctctgctagaaaaagaaagaggtg 513
Query: 3002 taattgaagaatttgaagctgtcaggaaagacgagaaggaaaaaacgaataaattcaatg 3061
|| | ||||| |||||||||||||||||||| |||||||||||| || ||| ||||||||
Sbjct: 514 tattggaagagtttgaagctgtcaggaaagaggagaaggaaaaagcggatagattcaatg 573
Query: 3062 cagttaaagagaggaggtatgagttgttcatggatgctttcaaccatatatctggtaata 3121
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ctgttaaacagaggaggtatgagttgttcatggatgctttcaaccatatatctggtaata 633
Query: 3122 tagataaaatttacaaacagcttacaaagagccacacacatcctatgggtggaacagcat 3181
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 634 tagataaaatttacaaacagcttacaaagagccacacacatcctctgggtggaacagcat 693
Query: 3182 acctgaatttggaaaatgaagatgatccatttctacatggcatcaagtacactgctatgc 3241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acctaaatttggaaaatgaagatgatccatttctacatggcatcaagtacactgctatgc 753
Query: 3242 ccccaacaaagcgctttcgcgatatggatcagctatctggtggggaaaagactgttgctg 3301
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ccccaacaaagcgcttccgtgatatggatcagctatctggtggggaaaagactgttgctg 813
Query: 3302 cccttgcgttgctattctccatccacagttataggccatcgccgttttttatattggatg 3361
| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 814 cacttgcgttgctattctccatccacagctataagccgtcgccgttttttatattggatg 873
Query: 3362 aagtcgatgctgcattggacaacttgaatgttgctaagtttgctggatttattcgttcaa 3421
|||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 874 aagttgatgctgcattggacaacttgaatgtcgctaaggttgctggctttattcgttcaa 933
Query: 3422 aatcttgtga 3431
||||||||||
Sbjct: 934 aatcttgtga 943
Score = 313 bits (158), Expect = 4e-84
Identities = 251/282 (89%)
Strand = Plus / Plus
Query: 2541 agagaatgacttgaaactggtacagaacaaagaggctgaagcaaagttagcagctgagaa 2600
|||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2 agagaatgacttaaaacgggtacaaaacaaagaggctgaagcaaagttagcagctgagaa 61
Query: 2601 tgctactgaaaatattaaccagcttaagggtgaagttgaagagtggagatcaaagtcaga 2660
|||||||||| | ||| | ||| |||||| ||||||| ||||||||||||||||||||||
Sbjct: 62 tgctactgaagagattgatcagtttaaggatgaagttaaagagtggagatcaaagtcaga 121
Query: 2661 ggactgcgaaaaggaaatccaagagtggaacaagaaggtttctgcagcaacaacaaacat 2720
||| || ||||||||||||||||| ||||| ||||||| |||| | | ||||||||| |
Sbjct: 122 ggattgtgaaaaggaaatccaagaatggaagaagaaggcttctttatccacaacaaactt 181
Query: 2721 atccaagcttaatggtctgataatttccaaggaggcacagattgagcagttgatggcgca 2780
|||||| |||||| ||||||||| ||||||||| |||||||||| |||||| ||| |||
Sbjct: 182 atccaaacttaatcgtctgataaactccaaggagacacagattgatcagttggtggtgca 241
Query: 2781 aaagcaggaaacattagacaagtgtgaactggaacagattag 2822
||||||||||| |||||| |||||||||||||| ||||||||
Sbjct: 242 aaagcaggaaatattagagaagtgtgaactggagcagattag 283
Score = 75.8 bits (38), Expect = 2e-12
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 3429 tgatgatggaaatggttttcaaagtatcgtgatatcacagaaagagaagttttttgacaa 3488
||||| ||||| ||||||||||||||| ||||| |||| |||||| | |||| ||||||
Sbjct: 965 tgatggtggaagtggttttcaaagtattgtgatttcactgaaagacagcttttatgacaa 1024
Query: 3489 tgctgatgcgctagttggagtttgcagggattct 3522
||||| ||||||||||| || | ||||||||||
Sbjct: 1025 agctgaggcgctagttggggtctacagggattct 1058
>gnl|LJGI|TC73196 similar to UniRef100_A7Q1S8 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 1176
Score = 618 bits (312), Expect = e-176
Identities = 506/570 (88%), Gaps = 3/570 (0%)
Strand = Plus / Plus
Query: 5 cgtcgctacagtcgccggggaaaatccaccgcttggagatggagaatttcaagtcgtaca 64
||||||||| |||||||||||||||||||| | || |||||||||||||| || ||||
Sbjct: 362 cgtcgctactctcgccggggaaaatccaccggctagaaatggagaatttcaaatcctaca 421
Query: 65 agggcttccaactgatcggtcccttccacaacttcaccgccatcatcggccccaacggcg 124
| ||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 422 aaggcttccaagttatcggtcccttctacgacttcaccgccatcatcggccccaacggcg 481
Query: 125 ccggaaaatcgaacctcatggacgccataagcttcgtgctcggcgtcaggaccagccacc 184
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||| |
Sbjct: 482 ccggaaaatccaacctcatggacgccataagcttcgttctcggcgtcagaaccggccagc 541
Query: 185 tccgcggcgcgcaactccaggaccttatctacgccttcgacgaccgtgagaaggaacaga 244
||||||||||||||||| ||||||| |||||||||||||||||| | |||||||| ||||
Sbjct: 542 tccgcggcgcgcaactcaaggacctcatctacgccttcgacgacagggagaaggagcaga 601
Query: 245 ccggacgcaaagccttcgtccgcttggtctaccggcttgcagacaacaacaccgagatcc 304
||||||| ||||||||||||||||||||||| ||| || |||||| |||||||||
Sbjct: 602 gaggacgcagagccttcgtccgcttggtctaccagctcgc---taacaactccgagatcc 658
Query: 305 aattcacccgaaccatcacctccgccgctgcaagcgagtaccgcatcgacggcaacgtag 364
| ||||||||||||||||||||||||| || |||||||||||||||||||| ||| | |
Sbjct: 659 agttcacccgaaccatcacctccgccggcgctagcgagtaccgcatcgacggtaaccttg 718
Query: 365 tcactttggacatctacaacgccaggctcaaatcgcttggtattcttgtgaaggctcgca 424
||| | ||| ||||||||||||| ||||||||| || ||||||||||| ||||||||||
Sbjct: 719 tcaactgggatatctacaacgccaagctcaaatcactcggtattcttgtcaaggctcgca 778
Query: 425 atttcttggtgtttcagggcgatgttgaatcgattgcgtcgaagaatccgaaggagctta 484
||||| | || |||||||| ||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 779 atttcctcgtctttcagggtgatgttgaatctattgcgtcgaagaatccgaaagagctaa 838
Query: 485 ctggcctaattgagcagatttctggctctgacgagcacaggagggagtatgagcagtttg 544
| ||||| || |||||||| |||||||||||||||| || |||||| |||||||||||||
Sbjct: 839 ccggccttatcgagcagatatctggctctgacgagctcaagagggactatgagcagtttg 898
Query: 545 aagaagaaaaaaccgctgctgaggagaaat 574
||||||||||| |||||||||||||||||
Sbjct: 899 aagaagaaaaaggcgctgctgaggagaaat 928
Score = 121 bits (61), Expect = 3e-26
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 654 acatcttcgcctgcaggcggagctgaaatcgttgaagaaggagcatttcctgtggcagtt 713
|||||| |||||||||| | |||||||||| |||||||||| |||||| ||||||||||
Sbjct: 1008 acatctccgcctgcaggagcagctgaaatctgtgaagaaggaacatttcttgtggcagtt 1067
Query: 714 gttgaatgtagagaatgatatcaagaaaacaactgaggatcttgcagatgaga 766
||| ||| |||| |||||||| | |||||||||||||||||||| ||||||||
Sbjct: 1068 gttcaatatagaaaatgatattacgaaaacaactgaggatcttgaagatgaga 1120
>gnl|LJGI|TC73522 homologue to UniRef100_A7Q1S8 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 482
Score = 242 bits (122), Expect = 1e-62
Identities = 176/194 (90%)
Strand = Plus / Plus
Query: 5 cgtcgctacagtcgccggggaaaatccaccgcttggagatggagaatttcaagtcgtaca 64
||||||||| |||||||||||||||||||| | || |||||||||||||| || ||||
Sbjct: 289 cgtcgctactctcgccggggaaaatccaccggctagaaatggagaatttcaaatcctaca 348
Query: 65 agggcttccaactgatcggtcccttccacaacttcaccgccatcatcggccccaacggcg 124
| ||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 349 aaggcttccaagttatcggtcccttctacgacttcaccgccatcatcggccccaacggcg 408
Query: 125 ccggaaaatcgaacctcatggacgccataagcttcgtgctcggcgtcaggaccagccacc 184
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||| |
Sbjct: 409 ccggaaaatccaacctcatggacgccataagcttcgttctcggcgtcagaaccggccagc 468
Query: 185 tccgcggcgcgcaa 198
||||||||||||||
Sbjct: 469 tccgcggcgcgcaa 482
>gnl|LJGI|TC75949 similar to UniRef100_A7Q1S8 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 686
Score = 236 bits (119), Expect = 8e-61
Identities = 179/199 (89%)
Strand = Plus / Plus
Query: 376 atctacaacgccaggctcaaatcgcttggtattcttgtgaaggctcgcaatttcttggtg 435
||||||||||||| ||||||||| || ||||||||||| ||||||||||||||| | ||
Sbjct: 12 atctacaacgccaagctcaaatcactcggtattcttgtcaaggctcgcaatttcctcgtc 71
Query: 436 tttcagggcgatgttgaatcgattgcgtcgaagaatccgaaggagcttactggcctaatt 495
|||||||| ||||||||||| |||||||||||||||||||| ||||| || ||||| ||
Sbjct: 72 tttcagggtgatgttgaatctattgcgtcgaagaatccgaaagagctaaccggccttatc 131
Query: 496 gagcagatttctggctctgacgagcacaggagggagtatgagcagtttgaagaagaaaaa 555
|||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct: 132 gagcagatatctggctctgacgagctcaagagggactatgagcagtttgaagaagaaaaa 191
Query: 556 accgctgctgaggagaaat 574
|||||||||||||||||
Sbjct: 192 ggcgctgctgaggagaaat 210
Score = 208 bits (105), Expect = 2e-52
Identities = 300/361 (83%), Gaps = 3/361 (0%)
Strand = Plus / Plus
Query: 686 tgaagaaggagcatttcctgtggcagttgttgaatgtagagaatgatatcaagaaaacaa 745
|||||||||| |||||| ||||||||||||| ||| |||| |||||||| | |||||| |
Sbjct: 326 tgaagaaggaacatttcttgtggcagttgttcaatatagaaaatgatattacgaaaacca 385
Query: 746 ctgaggat-cttgcagatgagaggaatagtcgtgaaggcgttaaggaaga-actggtgaa 803
|||||||| |||| |||||||| || ||||| || |||| ||||| ||||| ||
Sbjct: 386 ctgaggatgcttgaagatgagaccaaacgtcgtctagctgttattgaagagactgggaaa 445
Query: 804 tttgaagaatgaagctaggaagaaggagaaggagcaggctaagtatctgaaagagattgc 863
||| | |||||||| || || ||| | || |||||||| | ||||| ||||| |||||
Sbjct: 446 ttttgaaaatgaagcaagtaaaaagaaaaaagagcaggcccaatatcttaaagaaattgc 505
Query: 864 gctaggcgaaaagaaaattgctgagagaagcaacaaacttgacaagagtcaagctgggct 923
|||| | ||||||| |||| |||||| ||||||| |||||||| |||||||| ||| |||
Sbjct: 506 gctacgtgaaaagacaattactgagaaaagcaaccaacttgaccagagtcaacctgagct 565
Query: 924 t-ctgaagatgaaggaggaaatgattcgtatagattcgaagattaagaaggggaagaagg 982
| |||||| | ||||||||||||| |||||| |||| || || || || ||||||||||
Sbjct: 566 tgctgaagttaaaggaggaaatgactcgtatcaattcaaaaataaaaaaagggaagaagg 625
Query: 983 aacttgataagaaaagggaagatcggaggaggcgtgctgctgatatagaggagctacaaa 1042
|||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 626 aacttgataaaaaaagggaagaacggaggaggcatgctgctgatatagcggagctacaaa 685
Query: 1043 g 1043
|
Sbjct: 686 g 686
>gnl|LJGI|BW614418 similar to UniRef100_A7Q1S8 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 488
Score = 141 bits (71), Expect = 3e-32
Identities = 121/137 (88%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 184 ctccgcggcgcgcaactccaggaccttatctacgccttcgacgaccgtgagaaggaacag 243
|||||||||||||||||| ||||||| |||||||||||||||||| | |||||||| |||
Sbjct: 355 ctccgcggcgcgcaactcaaggacctcatctacgccttcgacgacagggagaaggagcag 414
Query: 244 accggacgcaaagccttcgtccgcttggtctaccggcttgcagacaacaacaccgagatc 303
| ||||||| ||||||||||||||||||||||| ||| || |||||| ||||||||
Sbjct: 415 agaggacgcagagccttcgtccgcttggtctaccagctcgc---taacaactccgagatc 471
Query: 304 caattcacccgaaccat 320
|| ||||||||||||||
Sbjct: 472 cagttcacccgaaccat 488
Score = 99.6 bits (50), Expect = 1e-19
Identities = 89/102 (87%)
Strand = Plus / Plus
Query: 5 cgtcgctacagtcgccggggaaaatccaccgcttggagatggagaatttcaagtcgtaca 64
||||||||| |||||||||||||||||||| | || |||||||||||||| || ||||
Sbjct: 244 cgtcgctactctcgccggggaaaatccaccggctagaaatggagaatttcaaatcctaca 303
Query: 65 agggcttccaactgatcggtcccttccacaacttcaccgcca 106
| ||||||||| | |||||||||||| || ||||||||||||
Sbjct: 304 aaggcttccaagttatcggtcccttctacgacttcaccgcca 345