Miyakogusa Predicted Gene
- Lj2g3v1670850.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1670850.1 Non Chatacterized Hit- tr|F6HMU4|F6HMU4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,42.68,2e-18,Domain in the RNA-binding Lupus La
protein;,RNA-binding protein Lupus La; seg,NULL; no
description,W,CUFF.37639.1
(1500 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72923 similar to UniRef100_A7R117 Cluster: Chromosome... 1110 0.0
gnl|LJGI|AV408729 similar to UniRef100_A7R117 Cluster: Chromosom... 858 0.0
gnl|LJGI|TC63923 similar to UniRef100_A7R117 Cluster: Chromosome... 757 0.0
gnl|LJGI|TC63183 375 e-103
>gnl|LJGI|TC72923 similar to UniRef100_A7R117 Cluster: Chromosome chr4 scaffold_333,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_333, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 714
Score = 1110 bits (560), Expect = 0.0
Identities = 560/560 (100%)
Strand = Plus / Plus
Query: 1 atggccatgaccggtgaccatgattcctccgatgacatccaatcgcgccgcaccgcgcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atggccatgaccggtgaccatgattcctccgatgacatccaatcgcgccgcaccgcgcgc 214
Query: 61 atccccgtcgctgcttcgccgtggaaccaggttgttcgcggtgaatcggagcctgttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atccccgtcgctgcttcgccgtggaaccaggttgttcgcggtgaatcggagcctgttgct 274
Query: 121 gctgctccttcctcgcctccgccgccggaagctttcccctctgacgctgtggatgattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gctgctccttcctcgcctccgccgccggaagctttcccctctgacgctgtggatgattca 334
Query: 181 ggctccgataacggcggccggaacaatggcggctcggttaacaggcctgcttggaatagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggctccgataacggcggccggaacaatggcggctcggttaacaggcctgcttggaatagg 394
Query: 241 ccatccaatggcgcgggtttggaggttcagcctgtcatggacgcgcaatcgtggcctgcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccatccaatggcgcgggtttggaggttcagcctgtcatggacgcgcaatcgtggcctgcg 454
Query: 301 ttgtcggaggctgctagagctaagatgaaatcggagtcgtcgaagggtttgttggatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttgtcggaggctgctagagctaagatgaaatcggagtcgtcgaagggtttgttggatata 514
Query: 361 gcctctgttccccaatcgcaggctgcgggaagcatgccttcttcctcgtcacaaagacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gcctctgttccccaatcgcaggctgcgggaagcatgccttcttcctcgtcacaaagacag 574
Query: 421 gtcagtgataaagcaagcgtgaacaacaatacggtgccaactcaccagaaaccaatcaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtcagtgataaagcaagcgtgaacaacaatacggtgccaactcaccagaaaccaatcaag 634
Query: 481 cataacagctcaaatacatcttcttatggtggccaccaacatcagtctgcgccccaagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cataacagctcaaatacatcttcttatggtggccaccaacatcagtctgcgccccaagtt 694
Query: 541 tcaaatgctgcaacagggtc 560
||||||||||||||||||||
Sbjct: 695 tcaaatgctgcaacagggtc 714
>gnl|LJGI|AV408729 similar to UniRef100_A7R117 Cluster: Chromosome chr4 scaffold_333,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_333, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 433
Score = 858 bits (433), Expect = 0.0
Identities = 433/433 (100%)
Strand = Plus / Plus
Query: 941 cttttgtgcctccagttccacatcatgcaatgttctttgcaggttcagaccctcagctgc 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttttgtgcctccagttccacatcatgcaatgttctttgcaggttcagaccctcagctgc 60
Query: 1001 atactaagatagtaaaccagattgactactattttagtaatgagaatttagttaaagaca 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atactaagatagtaaaccagattgactactattttagtaatgagaatttagttaaagaca 120
Query: 1061 cattcttgcggcagaacatggatgaccagggctgggttccaataaaattaattgcaggct 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cattcttgcggcagaacatggatgaccagggctgggttccaataaaattaattgcaggct 180
Query: 1121 tcaagaaagttatgcatttgactgacaatatccagcttatattggatgctgttcaaactt 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcaagaaagttatgcatttgactgacaatatccagcttatattggatgctgttcaaactt 240
Query: 1181 catatgttgttgaagtgcagggtgacaagataaggagacgaaatgattggatgagatgga 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 catatgttgttgaagtgcagggtgacaagataaggagacgaaatgattggatgagatgga 300
Query: 1241 tcatgccttctcctcagtttcctaatgttacaagccatggtgtgttgaatcatgacaaac 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcatgccttctcctcagtttcctaatgttacaagccatggtgtgttgaatcatgacaaac 360
Query: 1301 tggctgaacaattacacaacatttctctggagacaactaactacgacattccaggaagac 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggctgaacaattacacaacatttctctggagacaactaactacgacattccaggaagac 420
Query: 1361 taggtgttctatc 1373
|||||||||||||
Sbjct: 421 taggtgttctatc 433
>gnl|LJGI|TC63923 similar to UniRef100_A7R117 Cluster: Chromosome chr4 scaffold_333,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_333, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 691
Score = 757 bits (382), Expect = 0.0
Identities = 382/382 (100%)
Strand = Plus / Plus
Query: 1 atggccatgaccggtgaccatgattcctccgatgacatccaatcgcgccgcaccgcgcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atggccatgaccggtgaccatgattcctccgatgacatccaatcgcgccgcaccgcgcgc 198
Query: 61 atccccgtcgctgcttcgccgtggaaccaggttgttcgcggtgaatcggagcctgttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atccccgtcgctgcttcgccgtggaaccaggttgttcgcggtgaatcggagcctgttgct 258
Query: 121 gctgctccttcctcgcctccgccgccggaagctttcccctctgacgctgtggatgattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gctgctccttcctcgcctccgccgccggaagctttcccctctgacgctgtggatgattca 318
Query: 181 ggctccgataacggcggccggaacaatggcggctcggttaacaggcctgcttggaatagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggctccgataacggcggccggaacaatggcggctcggttaacaggcctgcttggaatagg 378
Query: 241 ccatccaatggcgcgggtttggaggttcagcctgtcatggacgcgcaatcgtggcctgcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccatccaatggcgcgggtttggaggttcagcctgtcatggacgcgcaatcgtggcctgcg 438
Query: 301 ttgtcggaggctgctagagctaagatgaaatcggagtcgtcgaagggtttgttggatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgtcggaggctgctagagctaagatgaaatcggagtcgtcgaagggtttgttggatata 498
Query: 361 gcctctgttccccaatcgcagg 382
||||||||||||||||||||||
Sbjct: 499 gcctctgttccccaatcgcagg 520
>gnl|LJGI|TC63183
Length = 1078
Score = 375 bits (189), Expect = e-103
Identities = 192/193 (99%)
Strand = Plus / Minus
Query: 1308 acaattacacaacatttctctggagacaactaactacgacattccaggaagactaggtgt 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 acaattacacaacatttctctggagacaactaactacgacattccaggaagactaggtgt 1018
Query: 1368 tctatctgataattctcaacatgggcctgtatttggggatttgaataatccaatgcagct 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 tctatctgataattctcaacatgggcctgtatttggggatttgaataatccaatgcagct 958
Query: 1428 ctccactagcgagagtgctggtcaagttggttttcatggctcagatcactctatttctgc 1487
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ctctactagcgagagtgctggtcaagttggttttcatggctcagatcactctatttctgc 898
Query: 1488 aagaaattagagc 1500
|||||||||||||
Sbjct: 897 aagaaattagagc 885