Miyakogusa Predicted Gene

Lj2g3v1574280.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1574280.1 Non Chatacterized Hit- tr|I1GX86|I1GX86_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,26.96,4e-18,SUBFAMILY NOT NAMED,NULL; ZINC FINGER CW-TYPE
COILED-COIL DOMAIN PROTEIN 3.,NULL; ATPase domain of H,CUFF.37606.1
         (2145 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS349196 similar to UniRef100_Q06488 Cluster: Chromatin...   533   e-150
gnl|LJGI|FS322615 UniRef100_Q14687 Cluster: Genetic suppressor e...   329   4e-89
gnl|LJGI|BP042356 similar to UniRef100_Q0ETB6 Cluster: Sigma-54 ...    72   2e-11

>gnl|LJGI|FS349196 similar to UniRef100_Q06488 Cluster: Chromatin structure-remodeling
            complex protein RSC2; n=2; Saccharomyces cerevisiae|Rep:,
            partial (1%)
          Length = 715

 Score =  533 bits (269), Expect = e-150
 Identities = 269/269 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1877 agcctttcaaaggtaaatgtgcagatgttgaacaaaagcagaagcctggcatagtcgtcg 1936
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  agcctttcaaaggtaaatgtgcagatgttgaacaaaagcagaagcctggcatagtcgtcg 656

                                                                        
Query: 1937 tttccacaaagcgatctacagatgattgcgtgctgaaagattctgatagtacaatgattg 1996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655  tttccacaaagcgatctacagatgattgcgtgctgaaagattctgatagtacaatgattg 596

                                                                        
Query: 1997 aagctgatacggatgcttctggatcagatgaaaaattggccaaagctgaggatttcaaat 2056
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  aagctgatacggatgcttctggatcagatgaaaaattggccaaagctgaggatttcaaat 536

                                                                        
Query: 2057 ctacaaacttaaagcggttgaaaaggggacttccaagatatgaggatgccagatccccgt 2116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535  ctacaaacttaaagcggttgaaaaggggacttccaagatatgaggatgccagatccccgt 476

                                         
Query: 2117 cttcaacaaagccgagaaagggataactg 2145
            |||||||||||||||||||||||||||||
Sbjct: 475  cttcaacaaagccgagaaagggataactg 447


>gnl|LJGI|FS322615 UniRef100_Q14687 Cluster: Genetic suppressor element 1; n=2; Homo
           sapiens|Rep: Genetic suppressor element 1 - Homo,
           partial (1%)
          Length = 380

 Score =  329 bits (166), Expect = 4e-89
 Identities = 178/182 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   gagtatgcacattttccttaaaaaagatcaaaaacttatatgccctgtaaagtgttctga 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 199 gagtatgcacattttccttaaaaaagatcaaaaacttatatgccctgtaaagtgttcaga 258

                                                                       
Query: 63  tccaccagttgaactgccacaagagttaatcataaagtgtatgtttaaacagaagaagat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 259 tccaccagttgaactgccacaagagttaatcataaagtgtatgtttaaacaaaaaaagat 318

                                                                       
Query: 123 gtctgggctttctaaattgccccaatttccacttacccgcgcgccatccaatccacgtga 182
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgtgggctttctaaattgccccaatttccacttacccgcgcgccatccaatccacgtga 378

             
Query: 183 tg 184
           ||
Sbjct: 379 tg 380


>gnl|LJGI|BP042356 similar to UniRef100_Q0ETB6 Cluster: Sigma-54 factor  interaction
            region; n=1; Thermoanaerobacter sp. X514|Rep: Sigma-54
            factor, partial (2%)
          Length = 429

 Score = 71.9 bits (36), Expect = 2e-11
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                
Query: 2110 tccccgtcttcaacaaagccgagaaagggataactg 2145
            ||||||||||||||||||||||||||||||||||||
Sbjct: 429  tccccgtcttcaacaaagccgagaaagggataactg 394