Miyakogusa Predicted Gene

Lj2g3v1550190.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1550190.1 tr|A9SWN4|A9SWN4_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,69.09,6e-17,zf-RING_2,Zinc finger, RING-type; RING FINGER
PROTEIN 6/12/38,NULL; Ring finger,Zinc finger, RING-ty,CUFF.37423.1
         (1695 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS323675 UniRef100_UPI000069FBBA Cluster: Homeobox prot...   571   e-162

>gnl|LJGI|FS323675 UniRef100_UPI000069FBBA Cluster: Homeobox protein Hox-C11.; n=1;
           Xenopus tropicalis|Rep: Homeobox protein Hox-C11. -
           Xenopus tropicalis, partial (6%)
          Length = 574

 Score =  571 bits (288), Expect = e-162
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggtccagtggcagcaaagcttcttcctcctcttgcagttcatcgtcgtcttccggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atggggtccagtggcagcaaagcttcttcctcctcttgcagttcatcgtcgtcttccggt 346

                                                                       
Query: 61  agtttccggaagggtcgatccaagaggcatagaggcttcccatcttattgtcttggaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agtttccggaagggtcgatccaagaggcatagaggcttcccatcttattgtcttggaagt 406

                                                                       
Query: 121 gcatctggatctcgtgacagtgataatgacgaccaggtttgtgatcagaataaagtgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gcatctggatctcgtgacagtgataatgacgaccaggtttgtgatcagaataaagtgaat 466

                                                                       
Query: 181 ggaagtgatgccacattcaccagtggcaatgaaatagactcaggtgaagtgaaaacagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggaagtgatgccacattcaccagtggcaatgaaatagactcaggtgaagtgaaaacagat 526

                                                           
Query: 241 tctttcagaaaggttaaatctgatgaattgccttgtatgccttcaaac 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tctttcagaaaggttaaatctgatgaattgccttgtatgccttcaaac 574