Miyakogusa Predicted Gene
- Lj2g3v1549640.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1549640.1 Non Chatacterized Hit- tr|I3RZV1|I3RZV1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.21,0,seg,NULL;
RNA_POL_K_14KD,DNA-directed RNA polymerase, 14-18kDa subunit,
conserved site; DNA-DIRECTED,CUFF.37392.1
(381 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61904 homologue to UniRef100_A2Q3E0 Cluster: DNA-dire... 755 0.0
gnl|LJGI|TC58797 homologue to UniRef100_A2Q3E0 Cluster: DNA-dire... 640 0.0
gnl|LJGI|TC79511 similar to UniRef100_P36428 Cluster: Alanyl-tRN... 82 3e-15
gnl|LJGI|TC62983 56 2e-07
>gnl|LJGI|TC61904 homologue to UniRef100_A2Q3E0 Cluster: DNA-directed RNA polymerase,
14 to 18 kDa subunit; n=1; Medicago truncatula|Rep:
DNA-directed RNA polymerase, 14 to 18 kDa subunit -
Medicago truncatula (Barrel medic), partial (91%)
Length = 756
Score = 755 bits (381), Expect = 0.0
Identities = 381/381 (100%)
Strand = Plus / Plus
Query: 1 atggccgacgaagactatgatgatgttgacatggggtacgaggatgagcctgtagagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 atggccgacgaagactatgatgatgttgacatggggtacgaggatgagcctgtagagcct 134
Query: 61 gagattgaggaaggtgcagaggaggatttggagaacaagaatgaggaggaagaaaatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gagattgaggaaggtgcagaggaggatttggagaacaagaatgaggaggaagaaaatgga 194
Query: 121 ggagaacctcttgagactgaggagaaggaagaggcacaaccagtgcagaggcctcggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggagaacctcttgagactgaggagaaggaagaggcacaaccagtgcagaggcctcggaag 254
Query: 181 acgtccaagtatatgaccaagtatgagagagccaggattttgggtacccgtgctcttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acgtccaagtatatgaccaagtatgagagagccaggattttgggtacccgtgctcttcaa 314
Query: 241 atcagcatgaatgcacctgtcatggttgagttggccggggaaactgacccacttgagatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atcagcatgaatgcacctgtcatggttgagttggccggggaaactgacccacttgagatt 374
Query: 301 gccatgaaggagcttcgagagcggaaaataccgtttaccatccgtcgctacttgcctgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gccatgaaggagcttcgagagcggaaaataccgtttaccatccgtcgctacttgcctgat 434
Query: 361 ggaagttatgaagattgggga 381
|||||||||||||||||||||
Sbjct: 435 ggaagttatgaagattgggga 455
>gnl|LJGI|TC58797 homologue to UniRef100_A2Q3E0 Cluster: DNA-directed RNA polymerase,
14 to 18 kDa subunit; n=1; Medicago truncatula|Rep:
DNA-directed RNA polymerase, 14 to 18 kDa subunit -
Medicago truncatula (Barrel medic), partial (91%)
Length = 833
Score = 640 bits (323), Expect = 0.0
Identities = 367/381 (96%), Gaps = 3/381 (0%)
Strand = Plus / Plus
Query: 1 atggccgacgaagactatgatgatgttgacatggggtacgaggatgagcctgtagagcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 atggccgacgaagactatgatgatgttgacatggggtacgaggatgagcctgtagaacct 180
Query: 61 gagattgaggaaggtgcagaggaggatttggagaacaagaatgaggaggaagaaaatgga 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagattgaggaaggggcagaggaggatttggagaacaagaatgaggaggaagaaaatgga 240
Query: 121 ggagaacctcttgagactgaggagaaggaagaggcacaaccagtgcagaggcctcggaag 180
| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 241 g---agcctcttgagactgaggaaaaggaagaggcacaaccagtgcagaggcctcgaaag 297
Query: 181 acgtccaagtatatgaccaagtatgagagagccaggattttgggtacccgtgctcttcaa 240
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 298 acgtccaagtatatgaccaagtatgagagagctagaattttgggtacccgtgctcttcaa 357
Query: 241 atcagcatgaatgcacctgtcatggttgagttggccggggaaactgacccacttgagatt 300
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 358 atcagcatgaatgcaccggtcatggttgagttggcgggggaaactgacccacttgagatt 417
Query: 301 gccatgaaggagcttcgagagcggaaaataccgtttaccatccgtcgctacttgcctgat 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 418 gccatgaaggagcttcgagagcggaaaataccctttaccatccgtcgctacttgcctgat 477
Query: 361 ggaagttatgaagattgggga 381
||||||||||| |||||||||
Sbjct: 478 ggaagttatgaggattgggga 498
>gnl|LJGI|TC79511 similar to UniRef100_P36428 Cluster: Alanyl-tRNA synthetase,
mitochondrial precursor; n=2; Arabidopsis thaliana|Rep:
Alanyl-tRNA synthetase, mitochondrial precursor -
Arabidopsis thaliana (Mouse-ear cress), partial (28%)
Length = 1395
Score = 81.8 bits (41), Expect = 3e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 218 ttttgggtacccgtgctcttcaaatcagcatgaatgcacctgtcatggttgagttgg 274
|||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 1056 ttttgggtactagtgctcttcaaatcagcatgaatgcacctgtcatgatcgagttgg 1112
>gnl|LJGI|TC62983
Length = 695
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 atggccgacgaagactatgatgatgttgacatgggg 36
||||| || |||||||||||||||||||||||||||
Sbjct: 219 atggctgatgaagactatgatgatgttgacatgggg 254