Miyakogusa Predicted Gene
- Lj2g3v1533000.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1533000.1 Non Chatacterized Hit- tr|C6T0N8|C6T0N8_SOYBN
Putative uncharacterized protein (Fragment)
OS=Glycine,40.97,1e-18,seg,NULL; F-box,F-box domain, cyclin-like;
F-BOX FAMILY PROTEIN,NULL; FBOX,F-box domain,
cyclin-like,gene.g41746.t1.1
(1173 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73194 weakly similar to UniRef100_A7QK65 Cluster: Chr... 317 9e-86
gnl|LJGI|FS326727 weakly similar to UniRef100_P0C2G1 Cluster: F-... 100 4e-20
>gnl|LJGI|TC73194 weakly similar to UniRef100_A7QK65 Cluster: Chromosome chr19
scaffold_111, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_111, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (15%)
Length = 1713
Score = 317 bits (160), Expect = 9e-86
Identities = 466/568 (82%)
Strand = Plus / Plus
Query: 1 atgataagtaacctccctgacttcattattggtcacattctttcttttcttcctaccaaa 60
||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct: 238 atgataagtaacctccctgacgtcattattggtcgcattctttctcttcttcctaccaaa 297
Query: 61 gatgcagtccgtacgagtgttttatccaagagttggacatatcgctggacattcatcact 120
||||||||| || ||| ||||||||||||||||| ||| |||||||| || ||
Sbjct: 298 gatgcagtctccacaagtcttttatccaagagttggttatacaaatggacatttattacg 357
Query: 121 gatctacactttgaagatacagggcgctattctaacaggatagtaaggagaaatttattt 180
| ||| | ||| |||||| || | | | ||| || || | |||| | | ||||||||
Sbjct: 358 cagctagaatttcaagataaagagtgttcttcatccaagaaaataagcaaagatttattt 417
Query: 181 ttgagctttgtgtacagagtactactttatctgaatagctcaagcatccagagtttctca 240
|||||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||
Sbjct: 418 gtgagctttgtgtacagggtactacttcatctgaatagttcaggcatccagagtttctcc 477
Query: 241 cttactatttcagagaagtatgaaccttgccatttggatcagtggatatctgttgttgta 300
||| ||| |||||| | |||||| || || ||||| |||||||||||| |||||||
Sbjct: 478 cttgatatgtcagaggattatgaagctattcacgtggatgagtggatatctgctgttgta 537
Query: 301 agccggggagtcaaaaagctttgtgtcaattcagaaaataaactaaccctttcctctcat 360
|||||||||||||||| |||||||||| ||||||| | ||| || |||||||||||||
Sbjct: 538 agccggggagtcaaaatgctttgtgtcgattcagaccagaaaggaaacctttcctctcat 597
Query: 361 tccattatgaaatacaagtccttagagcaactggtactatgtgtggttggttgtgagatt 420
||| |||||||||||||| |||||||| | || || |||| || | |||||||||||||
Sbjct: 598 tcccttatgaaatacaagaccttagaggagctagtgctatatgcgtatggttgtgagatt 657
Query: 421 aaagttcccaccactgcttgtctttcatccctcacagtcctaaatttatctggaattgag 480
||||||| ||| |||| | ||||||||||||||||||| || || ||||| |
Sbjct: 658 gaagttccgacctttgctattttttcatccctcacagtcctgaacttgactggagccatg 717
Query: 481 ttttttggtggaacttctaataactctggaaagcttcaccttgatttcccagttctgaga 540
|| |||||| ||||| |||| ||||||||| |||||||| |||||||||||||||||
Sbjct: 718 cttgttggtgacccttctgataaatctggaaaggttcaccttaatttcccagttctgaga 777
Query: 541 acttataagacaacagattgcacttggt 568
|| |||||||||| | |||||||||||
Sbjct: 778 acctataagacaaaaagttgcacttggt 805
Score = 93.7 bits (47), Expect = 2e-18
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 919 ctagcaaaagatttattggcagatcttcctacatttgaaatgttaagtcatatggagcta 978
||||||||||||| |||| ||| ||||||| |||| |||||||||||| | ||||||||
Sbjct: 1135 ctagcaaaagattcattgacaggtcttccttcattcaaaatgttaagtcgtttggagcta 1194
Query: 979 ggaaagattactggtgaaaatcttttggcattacttctaaaaacaccatatttgaagact 1038
||| || || |||||| ||| |||||||||||||||| ||| |||||| ||||||||
Sbjct: 1195 ggagcagttgctagtgaaattctgttggcattacttctaagaacgccatatctgaagact 1254
Query: 1039 ctt 1041
|||
Sbjct: 1255 ctt 1257
Score = 69.9 bits (35), Expect = 3e-11
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 1095 ggaagaagttaaagagaaactgtacacatttaagaaatgttgtagctgtatgattttgga 1154
||||||||| |||||||| |||||| ||||||||||||||||||| | ||||| |||| |
Sbjct: 1464 ggaagaagtaaaagagaagctgtactcatttaagaaatgttgtagttttatgagtttgaa 1523
Query: 1155 att 1157
|||
Sbjct: 1524 att 1526
Score = 60.0 bits (30), Expect = 3e-08
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 683 gtgcttcgagtcttacaaaattcacttataaaggttgtctatcaccggacaccattgtgt 742
||||||| |||||| | |||||| ||||| |||| || || ||| ||| ||| |||||
Sbjct: 920 gtgcttcacgtcttaaagaattcagttatattggttctccattaccagaccccactgtgt 979
Query: 743 ttgatttatctgcagcacatattgcttctgcttatatt 780
||||| ||||||||||| || ||||||||||| |||||
Sbjct: 980 ttgatctatctgcagcaaatgttgcttctgctgatatt 1017
>gnl|LJGI|FS326727 weakly similar to UniRef100_P0C2G1 Cluster: F-box/LRR-repeat
protein At3g58980; n=1; Arabidopsis thaliana|Rep:
F-box/LRR-repeat protein At3g58980 - Arabidopsis
thaliana (Mouse-ear cress), partial (8%)
Length = 631
Score = 99.6 bits (50), Expect = 4e-20
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 4 ataagtaacctccctgacttcattattggtcacattctttcttttcttcctaccaaagat 63
||||| ||||| |||||||||||||||||||| ||||||||||||||| || | ||||||
Sbjct: 259 ataagcaacctacctgacttcattattggtcatattctttcttttctttctgctaaagat 318
Query: 64 gcagtccgtacgagtgtt 81
||||||||||| ||||||
Sbjct: 319 gcagtccgtactagtgtt 336
Score = 56.0 bits (28), Expect = 5e-07
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 186 ctttgtgtacagagtactactttatctgaatagctcaagcatccagagtttctcacttac 245
||||||||| |||||||| | | ||||| |||| |||||||| | ||||| || |||||
Sbjct: 441 ctttgtgtatagagtacttcatcatctggatagttcaagcatagaaagtttttctcttac 500
Query: 246 tatttcagagaagtat 261
||| ||||||||||||
Sbjct: 501 tatatcagagaagtat 516