Miyakogusa Predicted Gene
- Lj2g3v1510590.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1510590.1 tr|G7KCB0|G7KCB0_MEDTR Cellulose synthase-like
protein OS=Medicago truncatula GN=MTR_5g029190 PE=4
S,77.63,0,RING/U-box,NULL; Nucleotide-diphospho-sugar
transferases,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT ,CUFF.37304.1
(3330 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC77626 similar to UniRef100_Q8GUZ9 Cluster: Cellulose ... 704 0.0
gnl|LJGI|TC79309 similar to UniRef100_A9TSY5 Cluster: Cellulose ... 176 6e-43
gnl|LJGI|TC62973 homologue to UniRef100_Q8GUZ9 Cluster: Cellulos... 111 3e-23
gnl|LJGI|TC67739 similar to UniRef100_A7Q0I5 Cluster: Chromosome... 94 7e-18
gnl|LJGI|DC598741 homologue to UniRef100_A7PBB7 Cluster: Chromos... 74 6e-12
gnl|LJGI|GO007099 homologue to UniRef100_A7PBB7 Cluster: Chromos... 60 9e-08
gnl|LJGI|BP033786 similar to UniRef100_A7P8T8 Cluster: Chromosom... 56 1e-06
>gnl|LJGI|TC77626 similar to UniRef100_Q8GUZ9 Cluster: Cellulose synthase-like protein
D4; n=2; Populus tremuloides|Rep: Cellulose synthase-like
protein D4 - Populus tremuloides (Quaking aspen), partial
(10%)
Length = 576
Score = 704 bits (355), Expect = 0.0
Identities = 355/355 (100%)
Strand = Plus / Plus
Query: 2976 tgacgagaacgacgagtttgccgatatttatgtgatcaaatggagctctctgatgatacc 3035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacgagaacgacgagtttgccgatatttatgtgatcaaatggagctctctgatgatacc 60
Query: 3036 accagtcactatcatcatggttaatctgattgcgatcgcggtctcggttgtcaggactat 3095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accagtcactatcatcatggttaatctgattgcgatcgcggtctcggttgtcaggactat 120
Query: 3096 atacagcgacgatcgtcactggagcagaatgattggaggtgtgttcttcagcttttgggt 3155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atacagcgacgatcgtcactggagcagaatgattggaggtgtgttcttcagcttttgggt 180
Query: 3156 gctggttcatctttatccatttgcaaaggggcttatgggaagaagaggtaagacaccaac 3215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gctggttcatctttatccatttgcaaaggggcttatgggaagaagaggtaagacaccaac 240
Query: 3216 gattgtgtttgtttggtctggtcttatatccatcactatatcactgctctgggttgctat 3275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gattgtgtttgtttggtctggtcttatatccatcactatatcactgctctgggttgctat 300
Query: 3276 taaccctccttctggcaacaatcaaattggagggtcctttcaattcccttgattt 3330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaccctccttctggcaacaatcaaattggagggtcctttcaattcccttgattt 355
>gnl|LJGI|TC79309 similar to UniRef100_A9TSY5 Cluster: Cellulose synthase-like D6,
glycosyltransferase family 2 protein; n=2; Physcomitrella
patens|Rep: Cellulose synthase-like D6,
glycosyltransferase family 2 protein - Physcomitrella
patens subsp. patens, partial (19%)
Length = 719
Score = 176 bits (89), Expect = 6e-43
Identities = 152/173 (87%)
Strand = Plus / Plus
Query: 2428 gaagatgttgttacaggttacagaatgcacaatagaggatggagatcagtgtattgcgtg 2487
|||||||| || || ||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct: 320 gaagatgtggtcactggttacagaatgcacaatagagggtggagatctgtgtactgtgtc 379
Query: 2488 accaaaagagatgcattcagaggcactgctcctataaacttaacagataggctccatcaa 2547
||||||||||||||||| ||||| || ||||| || |||||||||||||||||||||||
Sbjct: 380 accaaaagagatgcatttagaggaacagctcccatcaacttaacagataggctccatcag 439
Query: 2548 gttcttcgttgggcaacaggctcggtcgagatcttcttctcccggaacaatgc 2600
||||| || ||||||||||| || || |||||||||||||| ||||||||||
Sbjct: 440 gttctccgatgggcaacaggttctgtagagatcttcttctctaggaacaatgc 492
>gnl|LJGI|TC62973 homologue to UniRef100_Q8GUZ9 Cluster: Cellulose synthase-like
protein D4; n=2; Populus tremuloides|Rep: Cellulose
synthase-like protein D4 - Populus tremuloides (Quaking
aspen), partial (35%)
Length = 1632
Score = 111 bits (56), Expect = 3e-23
Identities = 719/932 (77%), Gaps = 6/932 (0%)
Strand = Plus / Plus
Query: 2344 gaggccatcgatgtgatctcatgttggtatgaagataaaacagaatggggcctcagaatt 2403
||||||||| ||||||||||||||||||||| || || || || ||||| | | |
Sbjct: 185 gaggccatcagtgtgatctcatgttggtatgaggacaagactgagtgggggcagcgcgtc 244
Query: 2404 gggtggatttacgggtccgtgaccgaagatgttgttacaggttacagaatgcacaataga 2463
|| ||||| ||||| || || || || |||||||| || ||||| ||||||||||| ||
Sbjct: 245 ggatggatctacggatcagtcactgaggatgttgtcaccggttatagaatgcacaaccga 304
Query: 2464 ggatggagatcagtgtattgcgtgaccaaaagagatgcattcagaggcactgctcctata 2523
||||||| |||||| || || ||||| || | ||||| || | || |||||||| ||
Sbjct: 305 ggatggaaatcagtttactgtgtgacaaagcgtgatgcttttcgcggtactgctcccatc 364
Query: 2524 aacttaacagataggctccatcaagttcttcgttgggcaacaggctcggtcgagatcttc 2583
||| | || |||||||| |||||||||||| | ||||| ||||| || || ||||| |||
Sbjct: 365 aacctcactgataggctgcatcaagttcttaggtgggctacaggttcagttgagatattc 424
Query: 2584 ttctcccggaacaatgc-tctcttagctggctctagattgaaattcctgcaaagaattgc 2642
|||||| | |||||||| | |||| || || | ||| ||||| |||| |||||||| ||
Sbjct: 425 ttctccagaaacaatgcatttctt-gcaagccccagaatgaaaatccttcaaagaatagc 483
Query: 2643 ttacctcaacgttggaatctaccctttcacttcactcttcctcgttgtttactgcttcat 2702
| ||| || ||||||||||| || |||||||| | |||||| |||| |||| |||| |
Sbjct: 484 atgccttaatgttggaatctatccattcacttcttttttcctcattgtctactacttcct 543
Query: 2703 ccctgcactttcccttttctctgatcagttcattgttggtacccttgaagtcacattcct 2762
||||||||||||||| ||||| | |||||||||||| || || ||||| || ||
Sbjct: 544 ccctgcactttccctcttctcaggccagttcattgttcaaacactcagcgtcacttttct 603
Query: 2763 agcctaccttttaggaatcacactgacccttgtggct-cttgctgctcttgagatcaagt 2821
| || || ||||| |||||| |||| || ||| | ||||||| |||||||| || |
Sbjct: 604 ctcttatctattaggcatcacagtgacact-gtgcatacttgctgtgcttgagattaaat 662
Query: 2822 ggtccggtatccatattgacgagtggtggaggaatgagcagttctggttaattggaggca 2881
|||| || || || |||| || |||||||||||||||||||| ||||| |||||||| |
Sbjct: 663 ggtcagggattcagcttgaagaatggtggaggaatgagcagttttggttgattggaggga 722
Query: 2882 caagcgctcatctagtagctgtgtttcagggagtgctaaaggtgctgtttggcattgaga 2941
| || |||||| ||| |||||| |||| ||| |||| || ||| | |||||||| |
Sbjct: 723 ccagtgctcatttagctgctgtgcttcaaggactgctcaaagtgatagcaggcattgaaa 782
Query: 2942 tttcattcactctgacatcgaaatcctcggctgatgacgagaacgacgagtttgccgata 3001
| || ||||| |||| || ||||| | |||||| | | ||||||||||| |||
Sbjct: 783 tctccttcaccttgacctcaaaatctggtggtgatgatgtcgatgacgagtttgctgatc 842
Query: 3002 tttatgtgatcaaatggagctctctgatgataccaccagtcactatcatcatggttaatc 3061
| ||||| |||| |||| || || ||||||||||| |||| ||||| ||||||||
Sbjct: 843 tctatgttttcaagtggacatcgctcatgataccacccatcacaatcatgatggttaact 902
Query: 3062 tgattgcgatcgcggtctcggttgtcaggactatatacagcgacgat-cgtcactggagc 3120
|||| || || || ||| || |||||| ||||||||| || || | ||| ||||||
Sbjct: 903 tgatagcaattgcagtcggagtgagcaggaccatatacagc-accatacctcagtggagc 961
Query: 3121 agaatgattggaggtgtgttcttcagcttttgggtgctggttcatctttatccatttgca 3180
| || | || ||||| ||||||||||||||||||||| |||||| || || |||||
Sbjct: 962 cgtttgctaggtggtgttttcttcagcttttgggtgctgactcatctctacccttttgct 1021
Query: 3181 aaggggcttatgggaagaagaggtaagacaccaacgattgtgtttgtttggtctggtctt 3240
|| || | |||||||||||||| | |||||| || ||||| | ||| ||||| |||||
Sbjct: 1022 aaaggtttgatgggaagaagagggaggacacctaccattgtttatgtgtggtcaggtctc 1081
Query: 3241 atatccatcactatatcactgctctgggttgc 3272
||| | ||||| |||||||| || ||||||||
Sbjct: 1082 atagcaatcacaatatcactcctttgggttgc 1113
>gnl|LJGI|TC67739 similar to UniRef100_A7Q0I5 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 1028
Score = 93.7 bits (47), Expect = 7e-18
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 2506 agaggcactgctcctataaacttaacagataggctccatcaagttcttcgttgggcaaca 2565
||||| || ||||| || ||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 2 agaggaacagctcccatcaacttaacagataggctccatcaggttctccgatgggcaaca 61
Query: 2566 ggctcggtcgagatcttcttctcccggaacaatgc 2600
|| || || |||||||||||||| ||||||||||
Sbjct: 62 ggttctgtagagatcttcttctctaggaacaatgc 96
>gnl|LJGI|DC598741 homologue to UniRef100_A7PBB7 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 139
Score = 73.8 bits (37), Expect = 6e-12
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1912 aggttcgaaggaattgacccttctgatcgctatgccaatcacaacactgtcttctttgat 1971
||||| ||||| ||||| || |||||| | ||||| ||||||||||||||||||||||||
Sbjct: 2 aggtttgaagggattgatccctctgatagatatgctaatcacaacactgtcttctttgat 61
Query: 1972 gtcaacatg 1980
|| ||||||
Sbjct: 62 gtaaacatg 70
>gnl|LJGI|GO007099 homologue to UniRef100_A7PBB7 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (22%)
Length = 729
Score = 60.0 bits (30), Expect = 9e-08
Identities = 159/202 (78%)
Strand = Plus / Plus
Query: 2537 ggctccatcaagttcttcgttgggcaacaggctcggtcgagatcttcttctcccggaaca 2596
|||||||||| || ||| | ||||| || |||||||| || || |||||||| | ||||
Sbjct: 83 ggctccatcaggtccttagatgggctaccggctcggttgaaatattcttctcaagaaaca 142
Query: 2597 atgctctcttagctggctctagattgaaattcctgcaaagaattgcttacctcaacgttg 2656
|||| || | ||| || | ||| ||||| | || ||||||||||| ||||| || ||||
Sbjct: 143 atgcccttctggctagcccaagaatgaaacttcttcaaagaattgcataccttaatgttg 202
Query: 2657 gaatctaccctttcacttcactcttcctcgttgtttactgcttcatccctgcactttccc 2716
| || |||||||| || || | ||||| |||| |||||||| ||||||| || ||||
Sbjct: 203 ggatttacccttttacatccatattcctaattgtctactgctttctccctgccctatccc 262
Query: 2717 ttttctctgatcagttcattgt 2738
| ||||||| |||||||||||
Sbjct: 263 tcttctctggccagttcattgt 284
Score = 58.0 bits (29), Expect = 4e-07
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 2845 tggtggaggaatgagcagttctggttaattggaggcacaagcgctcatctagtagctgtg 2904
|||||||| ||||||||||| ||||| |||||||| || || || ||||||| |||||||
Sbjct: 391 tggtggagaaatgagcagttttggttgattggaggaaccagtgcccatctagcagctgtg 450
Query: 2905 tttca 2909
||||
Sbjct: 451 attca 455
>gnl|LJGI|BP033786 similar to UniRef100_A7P8T8 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (13%)
Length = 487
Score = 56.0 bits (28), Expect = 1e-06
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 3199 agaggtaagacaccaacgattgtgtttgtttggtctggtcttat 3242
||||| |||||||| || |||||||| |||||||||||||||||
Sbjct: 169 agagggaagacacccaccattgtgttcgtttggtctggtcttat 126