Miyakogusa Predicted Gene
- Lj2g3v1496130.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1496130.1 tr|G7KDN8|G7KDN8_MEDTR E3 ubiquitin-protein
ligase RNF14 OS=Medicago truncatula GN=MTR_5g029700
PE=4,68.29,0,UBC-like,Ubiquitin-conjugating enzyme/RWD-like;
RING/U-box,NULL; ZF_RING_2,Zinc finger, RING-type; R,gene.g41697.t1.1
(1587 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC598671 weakly similar to UniRef100_A7PC55 Cluster: Ch... 632 e-180
gnl|LJGI|FS339205 601 e-171
gnl|LJGI|TC69311 similar to UniRef100_A7PC55 Cluster: Chromosome... 230 2e-59
gnl|LJGI|CB828189 similar to UniRef100_A7PC55 Cluster: Chromosom... 176 3e-43
>gnl|LJGI|DC598671 weakly similar to UniRef100_A7PC55 Cluster: Chromosome chr2
scaffold_11, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_11, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (22%)
Length = 577
Score = 632 bits (319), Expect = e-180
Identities = 451/495 (91%)
Strand = Plus / Plus
Query: 124 aatgatatcatgggtcggcttgataagttactcagtaaaattgaagaacctggagaattg 183
|||||| ||||||| ||||||||||||| |||| | ||||||| ||||||| ||||||
Sbjct: 83 aatgatctcatggggaggcttgataagttgctcactgaaattgatcaacctggtgaattg 142
Query: 184 tccgaggagcagaccacaatcaatgaccaattgcagcaagatgagttgcttgtgctggag 243
|||||||| |||| | | |||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 143 tccgaggaccagatcgctatcaatgaccaattgcagcaagatgagttgctagtggtggag 202
Query: 244 tcaatttatggagaaaactttgtcaccctcgagagttggaaaggccttcgttgcttgcag 303
|||||||||||||||||| || ||| ||| ||||| ||||||||||||||||| || |||
Sbjct: 203 tcaatttatggagaaaacgttttcagccttgagagatggaaaggccttcgttgttttcag 262
Query: 304 atacacatatgcattgatgttttggatgaaattgcaattacagctaagctgaactcttct 363
|||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||
Sbjct: 263 atacacatatgcattgatattttgggcgaaattgcaattatcgctaagctgaactcttct 322
Query: 364 gatgaacttgagactttaagcagcaattcagatgacttcttgtactctttcaaagttcag 423
|||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| | |
Sbjct: 323 aatgatcttgagactgtaagcagtaattcagatgacttcttgtactctttcaaagtccgg 382
Query: 424 tatcttccaccaattgttttgacatgtttattacctaagtcatacccaagccaccaacca 483
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatcttccacctattgtattgacatgtttattacctaagtcatacccaagccaccaacca 442
Query: 484 cctatatttacaatctctgtcaagtggttggaacccataaagattttgaatctatgttct 543
|||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||
Sbjct: 443 cctatatttacaatctctgtcaagtggttggaacccttaaagattttaagtttatgttct 502
Query: 544 gagttggattcaatatgggaagaacagcaagggcaggaagtaatttaccattgggtagaa 603
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 503 gagttggactcaatatgggaagagcagcaagggcaggaagtaatttaccattgggtagaa 562
Query: 604 tcaatacatggttct 618
| |||||||||||
Sbjct: 563 tggttacatggttct 577
>gnl|LJGI|FS339205
Length = 520
Score = 601 bits (303), Expect = e-171
Identities = 303/303 (100%)
Strand = Plus / Plus
Query: 1 atgatgaccgttttggaaaacttcacctcagatgaaattgaaaaacctgaactgaacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 atgatgaccgttttggaaaacttcacctcagatgaaattgaaaaacctgaactgaacagt 223
Query: 61 agcaacgttgtcgagcaacatggcgtggctagttcaagcgggactaaggaagaggatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 agcaacgttgtcgagcaacatggcgtggctagttcaagcgggactaaggaagaggatgat 283
Query: 121 gataatgatatcatgggtcggcttgataagttactcagtaaaattgaagaacctggagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gataatgatatcatgggtcggcttgataagttactcagtaaaattgaagaacctggagaa 343
Query: 181 ttgtccgaggagcagaccacaatcaatgaccaattgcagcaagatgagttgcttgtgctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttgtccgaggagcagaccacaatcaatgaccaattgcagcaagatgagttgcttgtgctg 403
Query: 241 gagtcaatttatggagaaaactttgtcaccctcgagagttggaaaggccttcgttgcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gagtcaatttatggagaaaactttgtcaccctcgagagttggaaaggccttcgttgcttg 463
Query: 301 cag 303
|||
Sbjct: 464 cag 466
>gnl|LJGI|TC69311 similar to UniRef100_A7PC55 Cluster: Chromosome chr2 scaffold_11,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_11, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 727
Score = 230 bits (116), Expect = 2e-59
Identities = 152/164 (92%)
Strand = Plus / Plus
Query: 1424 cagcatgtcctaattgtcgccaatttaatgcaaagattgaaaataacaatcacatgtttt 1483
|||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 231 cagcatgtcctagttgtcgacaatttaatgcaaagattggaaataacaatcacatgtttt 290
Query: 1484 gctgggcatgccaaagccattactgttacttatgcaaagaggttgtcaggcgctacactg 1543
||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 291 gctgggcatgccaaagccattactgctacttatgcaatgaggttgtcaggcgcggcacta 350
Query: 1544 accactatggtccgaaaggctgcaaacagcacactgagggatag 1587
| |||||||| |||||||||||||| ||||||| ||||||||||
Sbjct: 351 agcactatggaccgaaaggctgcaagcagcacagtgagggatag 394
>gnl|LJGI|CB828189 similar to UniRef100_A7PC55 Cluster: Chromosome chr2 scaffold_11,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_11, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 158
Score = 176 bits (89), Expect = 3e-43
Identities = 139/156 (89%)
Strand = Plus / Plus
Query: 1035 gtcaatgtctgatgttgtttattgcccaagatgtgaaacacgttgtatagaagatgaaga 1094
||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gtcaatgtctgatgttgttcatggcccaagatgtgaaacaccttgtatagaagatgaaga 60
Query: 1095 caagcatgctcaatgccctgaatgcttttttagcttttgtaccctttgcagagatcgacg 1154
| | |||||||||||||| | |||||||| ||||| ||||||||||| || || || ||
Sbjct: 61 ccatgatgctcaatgccctcagtgctttttnagcttctgtaccctttgtagggaacggcg 120
Query: 1155 gcatgttggcatagcttgcatgaccctggagatgaa 1190
||||||||||||| | |||||||| |||||||||||
Sbjct: 121 gcatgttggcataacatgcatgacgctggagatgaa 156