Miyakogusa Predicted Gene
- Lj2g3v1472950.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1472950.1 Non Chatacterized Hit- tr|A5BC54|A5BC54_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,40.82,0.000006,RING/U-box,NULL; seg,NULL; no description,Zinc
finger, RING/FYVE/PHD-type; ZF_RING_2,Zinc finger, RI,CUFF.37252.1
(1065 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67985 similar to UniRef100_Q2HS43 Cluster: Zinc finge... 1302 0.0
gnl|LJGI|TC74829 similar to UniRef100_Q2HS43 Cluster: Zinc finge... 113 2e-24
gnl|LJGI|BW631286 similar to UniRef100_Q2HS43 Cluster: Zinc fing... 54 2e-06
>gnl|LJGI|TC67985 similar to UniRef100_Q2HS43 Cluster: Zinc finger, RING-type;
Thioredoxin-related; n=1; Medicago truncatula|Rep: Zinc
finger, RING-type; Thioredoxin-related - Medicago
truncatula (Barrel medic), partial (76%)
Length = 1685
Score = 1302 bits (657), Expect = 0.0
Identities = 676/681 (99%), Gaps = 1/681 (0%)
Strand = Plus / Plus
Query: 386 cggagaatccgccggcttccaaggcggcgatcgagtcgatgccgacggtggagatcgggg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cggagaatccgccggcttccaaggcggcgatcgagtcgatgccgacggtggagatcgggg 632
Query: 446 agatggaggcgtgtaacgaggcgcagtgcgccgtttgcaaggaagaattcgagctgggtg 505
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aggtggaggtgtgtaacgaggcgcagtgcgccgtttgcaaggaagaattcgagctgggtg 692
Query: 506 cggaggcgcgtgagctaccgtgcaagcacatttaccattccgattgcatcgttccgtggc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cggaggcgcgtgagctaccgtgcaagcacatttaccattccgattgcatcgttccgtggc 752
Query: 566 tttcgatgagaaactcgtgcccggtgtgccggcacgagcttccttcagatctgaacgcta 625
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tttcgatgcggaactcgtgcccggtgtgccggcacgagcttccttcagatctgaacgcta 812
Query: 626 accctcttagggctccagggcaaatcgacgaggaagcgatcgggttgactatatggaggt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 accctcttagggctccagggcaaatcgacgaggaagcgatcgggttgactatatggaggt 872
Query: 686 tacccggcgggggattcgctgtgggtagattctccggtgggcggagtgctggggagagcc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tacccggcgggggattcgctgtgggtagattctccggtgggcggagtgctggggagagcc 932
Query: 746 atttgcc-gatggtgtacacggagatggatggtggggtgaattcaaaccgtgcaccaaga 804
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 atttgccggatggtgtacacggagatggatggtggggtgaattcaaaccgtgcaccaaga 992
Query: 805 agggtttctccgacggtgagcggacacagggttagggaacgacgtggaattggcagagtc 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 agggtttctccgacggtgagcggacacagggttagggaacgacgtggaattggcagagtc 1052
Query: 865 tttcggggtttcttgtcattctttggaattcgtggttcttcaaggtcaactcgttcttcg 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 tttcggggtttcttgtcattctttggaattcgtggttcttcaaggtcaactcgttcttcg 1112
Query: 925 tcttcttcaatttcgtctttgtcatcttcgtattctggtaattctgaagtgagtacaaca 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 tcttcttcaatttcgtctttgtcatcttcgtattctggtaattctgaagtgagtacaaca 1172
Query: 985 ggccttagccaattgagttcatcgctcaatagaaactcgcggagacgacgcaatatgtca 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 ggccttagccaattgagttcatcgctcaatagaaactcgcggagacgacgcaatatgtca 1232
Query: 1045 cagctggtattggaagattga 1065
|||||||||||||||||||||
Sbjct: 1233 cagctggtattggaagattga 1253
Score = 406 bits (205), Expect = e-112
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 1 atgagtttcgaaacgcaacccgaaacggcgtcgtactggtgctacagctgcacccgcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 atgagtttcgaaacgcaacccgaaacggcgtcgtactggtgctacagctgcacccgcttc 172
Query: 61 gtccacctctccgccgccggcaacatcgcctgcccccactgcgaaaccggcttcgttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gtccacctctccgccgccggcaacatcgcctgcccccactgcgaaaccggcttcgttgaa 232
Query: 121 gagatccaccccgaccaatcaccgaatcacgctcacgctcacggtctcagcccgttacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gagatccaccccgaccaatcaccgaatcacgctcacgctcacggtctcagcccgttacct 292
Query: 181 gaagatcccgtttcttcccggcggc 205
|||||||||||||||||||||||||
Sbjct: 293 gaagatcccgtttcttcccggcggc 317
Score = 329 bits (166), Expect = 2e-89
Identities = 175/178 (98%)
Strand = Plus / Plus
Query: 206 cccaggcatcgtcctccgcggaaccgctgacgacggagccgatcaagaaggaggcgccgc 265
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cccagtcatcgtgcttcgcggaaccgctgacgacggagccgatcaagaaggaggcgccgc 426
Query: 266 cgccgccttcgagctttactacgacgacggcgacggtaccggtctccgcccacttccgcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cgccgccttcgagctttactacgacgacggcgacggtaccggtctccgcccacttccgcc 486
Query: 326 gacggtttcagagtttctgctggggtctggattcgatcggatgttggagcaattctcg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gacggtttcagagtttctgctggggtctggattcgatcggatgttggagcaattctcg 544
>gnl|LJGI|TC74829 similar to UniRef100_Q2HS43 Cluster: Zinc finger, RING-type;
Thioredoxin-related; n=1; Medicago truncatula|Rep: Zinc
finger, RING-type; Thioredoxin-related - Medicago
truncatula (Barrel medic), partial (82%)
Length = 1380
Score = 113 bits (57), Expect = 2e-24
Identities = 186/229 (81%)
Strand = Plus / Plus
Query: 388 gagaatccgccggcttccaaggcggcgatcgagtcgatgccgacggtggagatcggggag 447
|||||||||||||| || ||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 521 gagaatccgccggcgtcgaaggcggcgattgagtcaatgccgacggtggagatcacggag 580
Query: 448 atggaggcgtgtaacgaggcgcagtgcgccgtttgcaaggaagaattcgagctgggtgcg 507
||||| | ||| |||| || || || ||||| || | || ||| ||||| ||
Sbjct: 581 gcggaggtgcaggcggagacgcactgtgctgtgtgcaaagacgcgtttgagatgggttcg 640
Query: 508 gaggcgcgtgagctaccgtgcaagcacatttaccattccgattgcatcgttccgtggctt 567
|||||||||||| | ||||||||||| | |||||||| ||||| || | |||||||||
Sbjct: 641 gaggcgcgtgagatgccgtgcaagcatctctaccattcggattgtattctcccgtggctt 700
Query: 568 tcgatgagaaactcgtgcccggtgtgccggcacgagcttccttcagatc 616
|| | ||| |||||||||||||||||||| |||||||| || |||||||
Sbjct: 701 tccacgaggaactcgtgcccggtgtgccgccacgagctgccgtcagatc 749
Score = 54.0 bits (27), Expect = 2e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 91 tgcccccactgcgaaaccggcttcgttgaagagatccac 129
|||||||||||| ||| ||||||||| ||||||||||||
Sbjct: 170 tgcccccactgccaaagcggcttcgtcgaagagatccac 208
>gnl|LJGI|BW631286 similar to UniRef100_Q2HS43 Cluster: Zinc finger, RING-type;
Thioredoxin-related; n=1; Medicago truncatula|Rep: Zinc
finger, RING-type; Thioredoxin-related - Medicago
truncatula (Barrel medic), partial (33%)
Length = 471
Score = 54.0 bits (27), Expect = 2e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 91 tgcccccactgcgaaaccggcttcgttgaagagatccac 129
|||||||||||| ||| ||||||||| ||||||||||||
Sbjct: 166 tgcccccactgccaaagcggcttcgtcgaagagatccac 204