Miyakogusa Predicted Gene

Lj2g3v1471890.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1471890.1 tr|B6SS58|B6SS58_MAIZE Ribonucleoprotein OS=Zea
mays PE=2 SV=1,38.2,0.000000005,RRM_1,RNA recognition motif domain;
RRM_6,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
,CUFF.37245.1
         (861 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC61191 similar to UniRef100_A7PC82 Cluster: Chromosome...  1659   0.0  

>gnl|LJGI|TC61191 similar to UniRef100_A7PC82 Cluster: Chromosome chr2 scaffold_11,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_11, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (65%)
          Length = 1194

 Score = 1659 bits (837), Expect = 0.0
 Identities = 853/861 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcagcgttagaatcatcactttctgtgttcgcacctcaacgtttctccactatccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  atggcagcgttagaatcatcactttctgtgttcgcacctcaacgtttctccactatccat 118

                                                                       
Query: 61  ctcttccctgcaaaaccacccgaattcgttaagctccatgcttccctttcccactctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ctcttccctgcaaaaccacccgaattcgttaagctccatgcttccctttcccactctcac 178

                                                                       
Query: 121 aaccttctcttctcttccaatgcctcctccaaaaccccaaaaccctgcactcaattatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aaccttctcttctcttccaatgcctcctccaaaaccccaaaaccctgcactcaattatgc 238

                                                                       
Query: 181 tctgctttgcaagaagtagcagaagcagctacggaggaagaaccagagcaagaccagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tctgctttgcaagaagtagcagaagcagctacggaggaagaaccagagcaagaccagcaa 298

                                                                       
Query: 241 gcaacctatatcaagaagaagctctacgtgtttaacttgccttggtctatgtccgccgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gcaacctatatcaagaagaagctctacgtgtttaacttgccttggtctatgtccgccgct 358

                                                                       
Query: 301 gacatcaaagacctctttggacagtgcggaactgtcaccgacgtcgagataataaggggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gacatcaaagacctctttggacagtgcggaactgtcaccgacgtcgagataataaggggc 418

                                                                       
Query: 361 aaagatgggagaggcaaaggatatgcttttgttactatggcttctggggaagaggctcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaagatgggagaggcaaaggatatgcttttgttactatggcttctggggaagaggctcag 478

                                                                       
Query: 421 gctgctgttgataaatttgacactcttgaattatccggacggatattaagggtagagctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gctgctgttgataaatttgacactcttgaattatccggacggatattaagggtagagctt 538

                                                                       
Query: 481 gcaaagagatttaagaaaccttctcccccaggtcctccaagtcctcctcctagtgaggca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gcaaagagatttaagaaaccttctcccccaggtcctccaagtcctcctcctagtgaggca 598

                                                                       
Query: 541 cgtcatgtaatttatgcatccaaccttgcatggaaagtaagatctacccatctcagagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cgtcatgtaatttatgcatccaaccttgcatggaaagtaagatctacccatctcagagaa 658

                                                                       
Query: 601 ttcttcactgagaatttcaaagcaccactttcagccagaattgtctttgataccccttct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttcttcactgagaatttcaaagcaccactttcagccagaattgtctttgataccccttct 718

                                                                       
Query: 661 ggatgggcaactgggtatggatttatttcttatcttacaaaggaggaagcagaggctgcc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ggatgggcaactgggtatggatttatttcttatcttacaaaggaggaagcagaggctgcc 778

                                                                       
Query: 721 atatctgctttggatgggaaggagttaatgggacgatcactttttctaaaaatcagtgnn 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 779 atatctgctttggatgggaaggagttaatgggacgatcactttttctaaaaatcagtgaa 838

                                                                       
Query: 781 nnnnnngttaaagaagctggaagcgaaaaagatgaagacttagaccaaggtcatgatgcc 840
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aaaaaagttaaagaagctggaagcgaaaaagatgaagacttagaccaaggtcatgatgcc 898

                                
Query: 841 ccaacagaagaatcataaatt 861
           |||||||||||||||||||||
Sbjct: 899 ccaacagaagaatcataaatt 919