Miyakogusa Predicted Gene
- Lj2g3v1468380.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1468380.1 tr|G8A0H7|G8A0H7_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_103,40.74,2e-19,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
,CUFF.37218.1
(304 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62388 weakly similar to UniRef100_A7Q622 Cluster: Chr... 603 e-172
gnl|LJGI|BP042107 weakly similar to UniRef100_Q1SMZ4 Cluster: Te... 109 1e-23
gnl|LJGI|FS336741 weakly similar to UniRef100_A7QVP2 Cluster: Ch... 84 6e-16
gnl|LJGI|FS341384 weakly similar to UniRef100_A7Q622 Cluster: Ch... 76 1e-13
gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Ch... 70 8e-12
gnl|LJGI|FS342564 weakly similar to UniRef100_A7Q622 Cluster: Ch... 52 2e-06
>gnl|LJGI|TC62388 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (14%)
Length = 833
Score = 603 bits (304), Expect = e-172
Identities = 304/304 (100%)
Strand = Plus / Plus
Query: 1 atgaagcattactccactgtcatatccctttctcatcaaatgcaactcaaggggattatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atgaagcattactccactgtcatatccctttctcatcaaatgcaactcaaggggattatg 582
Query: 61 cctaactttgtcacttccaacatcttgatcgattgttactgccatctaggtcaaatcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cctaactttgtcacttccaacatcttgatcgattgttactgccatctaggtcaaatcaat 642
Query: 121 ttcgctttttctgtatttgccactattcgcaagaggggttatcaaccagatgtcttcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttcgctttttctgtatttgccactattcgcaagaggggttatcaaccagatgtcttcacc 702
Query: 181 ttcgccaccttgatcaatggattttgtcaaatgggacaaataagacctgccctgcagttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ttcgccaccttgatcaatggattttgtcaaatgggacaaataagacctgccctgcagttg 762
Query: 241 cttagacgagccgaagacgacgaattggttcaacttaaaccggatgtggtgatatattca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 cttagacgagccgaagacgacgaattggttcaacttaaaccggatgtggtgatatattca 822
Query: 301 tagc 304
||||
Sbjct: 823 tagc 826
>gnl|LJGI|BP042107 weakly similar to UniRef100_Q1SMZ4 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (11%)
Length = 515
Score = 109 bits (55), Expect = 1e-23
Identities = 115/135 (85%)
Strand = Plus / Plus
Query: 1 atgaagcattactccactgtcatatccctttctcatcaaatgcaactcaaggggattatg 60
||||||||||||||||| | ||| || |||||||| |||||| |||| ||||| |||| |
Sbjct: 295 atgaagcattactccaccgccatttcactttctcaccaaatggaacttaagggaattagg 354
Query: 61 cctaactttgtcacttccaacatcttgatcgattgttactgccatctaggtcaaatcaat 120
||| || |||||||||||| |||||||||| ||||||||||||| |||||||| | | |
Sbjct: 355 cctgacattgtcacttccagcatcttgatcaattgttactgccacttaggtcaacttact 414
Query: 121 ttcgctttttctgta 135
| ||||||||||||
Sbjct: 415 tcagctttttctgta 429
>gnl|LJGI|FS336741 weakly similar to UniRef100_A7QVP2 Cluster: Chromosome chr14
scaffold_190, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_190, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (30%)
Length = 760
Score = 83.8 bits (42), Expect = 6e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 79 aacatcttgatcgattgttactgccatctaggtcaaatcaatttcgctttttctgtattt 138
|||||||||||| |||| |||||||| |||||||||||||||| |||||||||||| |
Sbjct: 308 aacatcttgatcaattgctactgccacctaggtcaaatcaattctgctttttctgtactc 367
Query: 139 gccactattcgcaagaggggttatca 164
|||| |||| |||||| ||||||||
Sbjct: 368 gccagaattctcaagagtggttatca 393
>gnl|LJGI|FS341384 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (20%)
Length = 802
Score = 75.8 bits (38), Expect = 1e-13
Identities = 128/158 (81%)
Strand = Plus / Plus
Query: 3 gaagcattactccactgtcatatccctttctcatcaaatgcaactcaaggggattatgcc 62
|||||||||| |||| | ||| || |||||||| |||||| |||| ||||| ||| |||
Sbjct: 179 gaagcattaccccaccgccatttcactttctcaccaaatggaacttaagggaattgcgcc 238
Query: 63 taactttgtcacttccaacatcttgatcgattgttactgccatctaggtcaaatcaattt 122
||| |||| ||| || |||||||||| ||||||||||| ||||||||| ||||| |
Sbjct: 239 aaacattgttactctcagcatcttgatcaattgttactgcaatctaggtcgaatcacctc 298
Query: 123 cgctttttctgtatttgccactattcgcaagaggggtt 160
|| ||||||||||| |||| |||| |||||| ||||
Sbjct: 299 tgcattttctgtattggccaacattctcaagagaggtt 336
>gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (21%)
Length = 766
Score = 69.9 bits (35), Expect = 8e-12
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 1 atgaagcattactccactgtcatatccctttctcatcaaatgcaactcaaggggattatg 60
|||||||||||| |||||| || ||||||||||| |||||| || ||||| |||||
Sbjct: 244 atgaagcattaccccactgctatttccctttctcaccaaatggaatctaagggaattatt 303
Query: 61 cctaactttgtcacttccaacatcttgatcgattgttactgccatctaggtcaaatcaat 120
||||| |||| ||| | |||||||||| ||||||||||||| |||||||||| |
Sbjct: 304 tctaacattgttactatgagcatcttgatcaattgttactgccacataggtcaaatacct 363
Query: 121 ttcgctttttctgta 135
||||| |||||||||
Sbjct: 364 ttcgccttttctgta 378
>gnl|LJGI|FS342564 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (22%)
Length = 785
Score = 52.0 bits (26), Expect = 2e-06
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 82 atcttgatcgattgttactgccatctaggtcaaatcaatttcgctttttctgtatttgcc 141
||||||||| |||||| |||| | | ||||||||| |||||| || |||||||| | |
Sbjct: 353 atcttgatcaattgtttctgcaacatgggtcaaatccctttcgccttctctgtattgggc 412
Query: 142 actattcgcaagaggggttatcaaccagat 171
| |||| ||||||||||||||| ||||||
Sbjct: 413 aagattctcaagaggggttatcagccagat 442