Miyakogusa Predicted Gene
- Lj2g3v1468350.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1468350.1 Non Chatacterized Hit- tr|I3SBY2|I3SBY2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=3 SV=1,98.59,2e-33,no
description,Homeodomain-like; Q6BHF3_DEBHA_Q6BHF3;,DNA-directed RNA
polymerase, subunit N/Rpb10; ,CUFF.37211.1
(216 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66211 homologue to UniRef100_Q39290 Cluster: DNA-dire... 428 e-120
gnl|LJGI|TC68363 homologue to UniRef100_Q39290 Cluster: DNA-dire... 381 e-105
gnl|LJGI|TC71215 homologue to UniRef100_Q39290 Cluster: DNA-dire... 349 4e-96
gnl|LJGI|FS347855 homologue to UniRef100_A7P1N3 Cluster: Chromos... 323 2e-88
>gnl|LJGI|TC66211 homologue to UniRef100_Q39290 Cluster: DNA-directed RNA polymerases
I, II, and III subunit RPABC5; n=1; Brassica napus|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC5 - Brassica napus (Rape), complete
Length = 604
Score = 428 bits (216), Expect = e-120
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 1 atgatcatccccgtccgttgtttcacctgtggaaaggtcatcggaaacaaatgggatccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 atgatcatccccgtccgttgtttcacctgtggaaaggtcatcggaaacaaatgggatccc 146
Query: 61 tatctggatcttctgcagtctgattacagtgaaggagatgcattggatgctttgggtcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tatctggatcttctgcagtctgattacagtgaaggagatgcattggatgctttgggtcta 206
Query: 121 gttcgatattgttgtaggcgcatgcttatgacccatgttgacctcatcgagaagctgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gttcgatattgttgtaggcgcatgcttatgacccatgttgacctcatcgagaagctgctg 266
Query: 181 aattacaacactctggacaagtctgataccagttaa 216
||||||||||||||||||||||||||||||||||||
Sbjct: 267 aattacaacactctggacaagtctgataccagttaa 302
>gnl|LJGI|TC68363 homologue to UniRef100_Q39290 Cluster: DNA-directed RNA polymerases
I, II, and III subunit RPABC5; n=1; Brassica napus|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC5 - Brassica napus (Rape), complete
Length = 690
Score = 381 bits (192), Expect = e-105
Identities = 210/216 (97%)
Strand = Plus / Plus
Query: 1 atgatcatccccgtccgttgtttcacctgtggaaaggtcatcggaaacaaatgggatccc 60
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 60 atgatcatccccgtccgttgtttcacatgtggaaaggtcattggaaacaaatgggatccc 119
Query: 61 tatctggatcttctgcagtctgattacagtgaaggagatgcattggatgctttgggtcta 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 120 tatctggatcttctgcagtctgattacagtgaaggagatgcgttggatgctttggggcta 179
Query: 121 gttcgatattgttgtaggcgcatgcttatgacccatgttgacctcatcgagaagctgctg 180
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 180 gttcgatactgttgtaggcgcatgcttatgacccatgttgacctcattgagaagctgctg 239
Query: 181 aattacaacactctggacaagtctgataccagttaa 216
||||||||||||||||||||||||||||||||||||
Sbjct: 240 aattacaacactctggacaagtctgataccagttaa 275
>gnl|LJGI|TC71215 homologue to UniRef100_Q39290 Cluster: DNA-directed RNA polymerases
I, II, and III subunit RPABC5; n=1; Brassica napus|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC5 - Brassica napus (Rape), complete
Length = 612
Score = 349 bits (176), Expect = 4e-96
Identities = 206/216 (95%)
Strand = Plus / Plus
Query: 1 atgatcatccccgtccgttgtttcacctgtggaaaggtcatcggaaacaaatgggatccc 60
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 67 atgattatccccgtccgttgtttcacctgtggaaaggtcattggaaacaaatgggatcca 126
Query: 61 tatctggatcttctgcagtctgattacagtgaaggagatgcattggatgctttgggtcta 120
||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct: 127 tatttggatcttctgcagtcagattacagtgaaggagatgcactggatgctttggggcta 186
Query: 121 gttcgatattgttgtaggcgcatgcttatgacccatgttgacctcatcgagaagctgctg 180
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 187 gttcgatactgttgtaggcgcatgcttatgacccacgttgacctcattgagaagctgctg 246
Query: 181 aattacaacactctggacaagtctgataccagttaa 216
||||||||||||||||||||||||||||||||||||
Sbjct: 247 aattacaacactctggacaagtctgataccagttaa 282
>gnl|LJGI|FS347855 homologue to UniRef100_A7P1N3 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (46%)
Length = 704
Score = 323 bits (163), Expect = 2e-88
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 54 ggatccctatctggatcttctgcagtctgattacagtgaaggagatgcattggatgcttt 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggatccctatctggatcttctgcagtctgattacagtgaaggagatgcattggatgcttt 520
Query: 114 gggtctagttcgatattgttgtaggcgcatgcttatgacccatgttgacctcatcgagaa 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gggtctagttcgatattgttgtaggcgcatgcttatgacccatgttgacctcatcgagaa 580
Query: 174 gctgctgaattacaacactctggacaagtctgataccagttaa 216
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gctgctgaattacaacactctggacaagtctgataccagttaa 623