Miyakogusa Predicted Gene
- Lj2g3v1468300.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1468300.1 tr|Q2R6R5|Q2R6R5_ORYSJ Expressed protein OS=Oryza
sativa subsp. japonica GN=LOC_Os11g19130 PE=2 SV=1,33.78,3e-18,SPT2
chromatin protein,Chromatin SPT2; SPT2,Chromatin SPT2; SUBFAMILY NOT
NAMED,NULL; YEAST SPT2-REL,CUFF.37215.1
(1425 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69543 weakly similar to UniRef100_A7R5Y8 Cluster: Chr... 1013 0.0
gnl|LJGI|AV410083 similar to UniRef100_A7R5Y8 Cluster: Chromosom... 831 0.0
gnl|LJGI|GO023847 similar to UniRef100_UPI0000141A8E Cluster: te... 700 0.0
gnl|LJGI|TC73246 similar to UniRef100_A7R2X0 Cluster: Chromosome... 545 e-154
gnl|LJGI|TC82033 weakly similar to UniRef100_A0BYM8 Cluster: Chr... 305 4e-82
gnl|LJGI|BP045004 similar to UniRef100_A7R5Y8 Cluster: Chromosom... 58 2e-07
gnl|LJGI|BP075922 52 1e-05
gnl|LJGI|TC58135 similar to UniRef100_Q337R4 Cluster: Ubiquitin ... 52 1e-05
>gnl|LJGI|TC69543 weakly similar to UniRef100_A7R5Y8 Cluster: Chromosome undetermined
scaffold_1099, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1099,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (24%)
Length = 711
Score = 1013 bits (511), Expect = 0.0
Identities = 514/515 (99%)
Strand = Plus / Plus
Query: 911 agaaaccactcccttcgaagttgaattcatctgctccaaaacagttcgtggaacagagaa 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agaaaccactcccttcgaagttgaattcatctgctccaaaacagttcgtggaacagagaa 61
Query: 971 gagacgtacgtgtacaaaataaaccactcccttcgaaggtgcattcatctgctccaaaac 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gagacgtacgtgtacaaaataaaccactcccttcgaaggtgcattcatctgctccaaaac 121
Query: 1031 agatcgtggatcaaagaaaagactcacgagaccaaaataaaccaaaaatggtacctaaac 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 agatcgtggatcaaagaaaagactcacgagaccaaaataaaccaaaaatggtacctaaac 181
Query: 1091 aaccagtggcatcatcaagagctcaggtaaataagccaccacttaaacaaattccaaagc 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aaccagtggcatcatcaagagctcaggtaaataagccaccacttaaacaaattccaaagc 241
Query: 1151 gttcagatttgccagttcaccgtccaaagaataaggttgggaagcgacatcctgatgagg 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gttcagatttgccagttcaccgtccaaagaataaggttgggaagcgacatcctgatgagg 301
Query: 1211 atgaggatgaggatgatggaatggattatcgcaatatgatcagatcaatgtttaattaca 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atgaggatgaggatgatggaatggattatcgcaatatgatcagatcaatgtttaattaca 361
Query: 1271 accccaataagtttgttggagatgatgacgatgataacatggaggcaggctttgatgaaa 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 accccaataagtttgttggagatgatgacgatgataacatggaggcaggctttgatgaaa 421
Query: 1331 tcatgagggaggaaaagaggagtgcactaattgctaaaaaggaggatgaggagcagctta 1390
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcatgggggaggaaaagaggagtgcactaattgctaaaaaggaggatgaggagcagctta 481
Query: 1391 ggttgatagaagagcaggaggaaagagaacggaga 1425
|||||||||||||||||||||||||||||||||||
Sbjct: 482 ggttgatagaagagcaggaggaaagagaacggaga 516
>gnl|LJGI|AV410083 similar to UniRef100_A7R5Y8 Cluster: Chromosome undetermined
scaffold_1099, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1099,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (15%)
Length = 421
Score = 831 bits (419), Expect = 0.0
Identities = 419/419 (100%)
Strand = Plus / Plus
Query: 591 gggacgcccagctcaagttgctaggatgatcaaacaacctttgatcaatggcggcaagcc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gggacgcccagctcaagttgctaggatgatcaaacaacctttgatcaatggcggcaagcc 62
Query: 651 tgctcgtggcagtggtgagaaccggaaacctgctgtgggtgctggtcattcagttcctaa 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tgctcgtggcagtggtgagaaccggaaacctgctgtgggtgctggtcattcagttcctaa 122
Query: 711 atcagggcccagttgtaaattaagtgataccaataagtccggtatggcatcagtagattc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atcagggcccagttgtaaattaagtgataccaataagtccggtatggcatcagtagattc 182
Query: 771 tagaaaacagcttggtagcaacagtgggattggaccaggccggccagtggtgtcaaaaca 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tagaaaacagcttggtagcaacagtgggattggaccaggccggccagtggtgtcaaaaca 242
Query: 831 gttgccttcaaagatgcctgcaagtaccatggggaataaatcatccacacttggtatgaa 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gttgccttcaaagatgcctgcaagtaccatggggaataaatcatccacacttggtatgaa 302
Query: 891 aaggtctgtaaatggtgtgcagaaaccactcccttcgaagttgaattcatctgctccaaa 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaggtctgtaaatggtgtgcagaaaccactcccttcgaagttgaattcatctgctccaaa 362
Query: 951 acagttcgtggaacagagaagagacgtacgtgtacaaaataaaccactcccttcgaagg 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 acagttcgtggaacagagaagagacgtacgtgtacaaaataaaccactcccttcgaagg 421
Score = 79.8 bits (40), Expect = 4e-14
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 991 aaaccactcccttcgaaggtgcattcatctgctccaaaacagatcgtggatcaaagaaaa 1050
|||||||||||||||||| || |||||||||||||||||||| ||||||| || |||| |
Sbjct: 325 aaaccactcccttcgaagttgaattcatctgctccaaaacagttcgtggaacagagaaga 384
Query: 1051 gactcacgagaccaaaataaacca 1074
||| ||| | ||||||||||||
Sbjct: 385 gacgtacgtgtacaaaataaacca 408
>gnl|LJGI|GO023847 similar to UniRef100_UPI0000141A8E Cluster: tetra-peptide repeat
homeobox-like (TPRXL) on chromosome 3; n=1; Homo
sapiens|Rep: tetra-peptide repeat homeobox-like (TPRXL)
on chromosome 3 - Homo sapiens, partial (20%)
Length = 644
Score = 700 bits (353), Expect = 0.0
Identities = 360/361 (99%), Gaps = 1/361 (0%)
Strand = Plus / Plus
Query: 1043 aaagaaaagactcacgagaccaaaataaaccaaaaatggtacctaaacaaccagtggcat 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaagaaaagactcacgagaccaaaataaaccaaaaatggtacctaaacaaccagtggcat 344
Query: 1103 catcaagagctcaggtaaataagccaccacttaaacaaattccaaagcgttcagatttgc 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 catcaagagctcaggtaaataagccaccacttaaacaaattccaaagcgttcagatttgc 404
Query: 1163 cagttcaccgtccaaagaataaggttgggaagcgacatcctgatgaggatgaggatgagg 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cagttcaccgtccaaagaataaggttgggaagcgacatcctgatgaggatgaggatgagg 464
Query: 1223 atgatggaatggattatcgcaatatgatcagatcaatgtttaattacaaccccaataagt 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atgatggaatggattatcgcaatatgatcagatcaatgtttaattacaaccccaataagt 524
Query: 1283 ttgttggagatgatgacgatgataacatggaggcaggctttgatgaaatcatgagggagg 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttgttggagatgatgacgatgataacatggaggcaggctttgatgaaatcatgagggagg 584
Query: 1343 aaaagaggagtgcactaattgctaaaaaggaggatgaggagcagcttaggttgatagaag 1402
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 585 aaaagaggagtgcactaattgctaaaaaggaggatgaggagcagctta-gttgatagaag 643
Query: 1403 a 1403
|
Sbjct: 644 a 644
Score = 133 bits (67), Expect = 3e-30
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 125 cgccgcctcgtcagcctacaaaggaagaaatagaataccttgggttgaggcagaagttga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cgccgcctcgtcagcctacaaaggaagaaatagaataccttgggttgaggcagaagttga 285
Query: 185 aagaaaa 191
|||||||
Sbjct: 286 aagaaaa 292
Score = 125 bits (63), Expect = 8e-28
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 atgcggggctatgatagagatgagctcaatgattacgatggatatgagtctgaacaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 atgcggggctatgatagagatgagctcaatgattacgatggatatgagtctgaacaacag 161
Query: 61 gag 63
|||
Sbjct: 162 gag 164
>gnl|LJGI|TC73246 similar to UniRef100_A7R2X0 Cluster: Chromosome undetermined
scaffold_461, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_461,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (12%)
Length = 570
Score = 545 bits (275), Expect = e-154
Identities = 278/279 (99%)
Strand = Plus / Plus
Query: 125 cgccgcctcgtcagcctacaaaggaagaaatagaataccttgggttgaggcagaagttga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cgccgcctcgtcagcctacaaaggaagaaatagaataccttgggttgaggcagaagttga 351
Query: 185 aagaaaatcatagaaagcagttaaggaaggagaatagtgcttcccttaaagattgtagtg 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 352 aagaaaatcatagaaagcagttaaggaaggagaatagtgctccccttaaagattgtagtg 411
Query: 245 ctacaaagaagaagcttcctaatgataactttgggtccttttttggcccttctcaaccag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctacaaagaagaagcttcctaatgataactttgggtccttttttggcccttctcaaccag 471
Query: 305 ttattgcaccaagagtaatccaagagagcaagtcattgttagaaaaccagcatttgcagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttattgcaccaagagtaatccaagagagcaagtcattgttagaaaaccagcatttgcagt 531
Query: 365 ctaggctctctaacacgtcacacgttaacaaaaatgtga 403
|||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctaggctctctaacacgtcacacgttaacaaaaatgtga 570
Score = 125 bits (63), Expect = 8e-28
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 atgcggggctatgatagagatgagctcaatgattacgatggatatgagtctgaacaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atgcggggctatgatagagatgagctcaatgattacgatggatatgagtctgaacaacag 227
Query: 61 gag 63
|||
Sbjct: 228 gag 230
>gnl|LJGI|TC82033 weakly similar to UniRef100_A0BYM8 Cluster: Chromosome undetermined
scaffold_137, whole genome shotgun sequence; n=1;
Paramecium tetraurelia|Rep: Chromosome undetermined
scaffold_137, whole genome shotgun sequence - Paramecium
tetraurelia, partial (5%)
Length = 480
Score = 305 bits (154), Expect = 4e-82
Identities = 190/202 (94%)
Strand = Plus / Plus
Query: 1223 atgatggaatggattatcgcaatatgatcagatcaatgtttaattacaaccccaataagt 1282
||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 1 atgatggaatggattttcgcaatatgatcagatcaatgtttaatttcaccccccataagt 60
Query: 1283 ttgttggagatgatgacgatgataacatggaggcaggctttgatgaaatcatgagggagg 1342
||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 61 ttgttggagatgatgccgatgataacatggaggcaggctttgatgtattcatgagggagg 120
Query: 1343 aaaagaggagtgcactaattgctaaaaaggaggatgaggagcagcttaggttgatagaag 1402
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 121 aaaagaggagtgccctcattgctaaaaaggaggatgaggaccagcttaggttgatataaa 180
Query: 1403 agcaggaggaaagagaacggag 1424
||||||||||||||||||||||
Sbjct: 181 agcaggaggaaagagaacggag 202
>gnl|LJGI|BP045004 similar to UniRef100_A7R5Y8 Cluster: Chromosome undetermined
scaffold_1099, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1099,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (19%)
Length = 516
Score = 58.0 bits (29), Expect = 2e-07
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 1320 ctttgatgaaatcatgagggaggaaaagaggagtgcactaattgctaaaaaggaggatga 1379
|||||| |||||||||||||| |||| ||||||||| |||||| | || ||||||||
Sbjct: 516 ctttgaggaaatcatgagggaagaaaggaggagtgccnaaattgcgagaagagaggatga 457
Query: 1380 ggagcagcttaggtt 1394
||||| ||||||||
Sbjct: 456 ggagcnacttaggtt 442
>gnl|LJGI|BP075922
Length = 394
Score = 52.0 bits (26), Expect = 1e-05
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 316 agagtaatccaagagagc-aagtcattgttagaaaaccagcatttg 360
||||||||||| |||||| |||||||||||||| ||||||| ||||
Sbjct: 129 agagtaatccatgagagcgaagtcattgttagataaccagcctttg 84
>gnl|LJGI|TC58135 similar to UniRef100_Q337R4 Cluster: Ubiquitin carrier protein; n=1;
Oryza sativa Japonica Group|Rep: Ubiquitin carrier
protein - Oryza sativa subsp. japonica (Rice), partial
(96%)
Length = 861
Score = 52.0 bits (26), Expect = 1e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1204 gatgaggatgaggatgaggatgatgg 1229
||||||||||||||||||||||||||
Sbjct: 554 gatgaggatgaggatgaggatgatgg 579