Miyakogusa Predicted Gene
- Lj2g3v1467880.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1467880.1 tr|I3SY17|I3SY17_LOTJA Serine
hydroxymethyltransferase OS=Lotus japonicus PE=2
SV=1,99.42,0,SHMT,Serine hydroxymethyltransferase; PLP-dependent
transferases,Pyridoxal phosphate-dependent trans,CUFF.37366.1
(1554 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59359 homologue to UniRef100_A9YWS0 Cluster: Serine-h... 3065 0.0
gnl|LJGI|TC77069 similar to UniRef100_P34899 Cluster: Serine hyd... 926 0.0
gnl|LJGI|FS340433 homologue to UniRef100_A9PL06 Cluster: Mitocho... 333 2e-90
gnl|LJGI|TC64633 homologue to UniRef100_Q45FE6 Cluster: Serine h... 232 5e-60
>gnl|LJGI|TC59359 homologue to UniRef100_A9YWS0 Cluster:
Serine-hydroxymethyltransferase; n=1; Medicago
truncatula|Rep: Serine-hydroxymethyltransferase -
Medicago truncatula (Barrel medic), complete
Length = 1787
Score = 3065 bits (1546), Expect = 0.0
Identities = 1553/1554 (99%), Gaps = 1/1554 (0%)
Strand = Plus / Plus
Query: 1 atggcaatggcaatggcgcttcgcaggctttcatcttccatcgacaagcctttacgtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 atggcaatggcaatggcgcttcgcaggctttcatcttccatcgacaagcctttacgtcct 97
Query: 61 ctcttcaacgcttcctctgtttactacaagtcctctttgcctgatgaagctgtctacgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ctcttcaacgcttcctctgtttactacaagtcctctttgcctgatgaagctgtctacgag 157
Query: 121 aaaacaactgttacgtggccaaagcaattgaatgctccactcgaggttgttgatcctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 aaaacaactgttacgtggccaaagcaattgaatgctccactcgaggttgttgatcctgaa 217
Query: 181 attgctgatatcattgagcatgagaaagctagacaatggaaggggctggagctgataccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 attgctgatatcattgagcatgagaaagctagacaatggaaggggctggagctgataccc 277
Query: 241 tcagagaatttcacttctctctctgtaatgcaagctgttggctctgtcatgacaaacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcagagaatttcacttctctctctgtaatgcaagctgttggctctgtcatgacaaacaaa 337
Query: 301 tacagtgaaggatatcccggtgcaagatactatggtggaaatgagtttattgacatggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tacagtgaaggatatcccggtgcaagatactatggtggaaatgagtttattgacatggca 397
Query: 361 gaaacactatgccagaagcgtgccttggaagcatttaggttggatccagcaaaatgggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaaacactatgccagaagcgtgccttggaagcatttaggttggatccagcaaaatgggga 457
Query: 421 gtgaatgtgcagcctttgtctggttctccttccaattttcatgtttatactgcattgcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtgaatgtgcagcctttgtctggttctccttccaattttcatgtttatactgcattgcta 517
Query: 481 aaacctcatgatagaatcatggcacttgatcttcctcatggagggcatctttctcacggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaacctcatgatagaatcatggcacttgatcttcctcatggagggcatctttctcacggt 577
Query: 541 taccagactgacaccaaaaagatatccgcggtctctatattttttgagacaatgccatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 taccagactgacaccaaaaagatatccgcggtctctatattttttgagacaatgccatat 637
Query: 601 agattggatgaaagcacaggatacattgactatgaccagttggaggcatcggctaaactc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 agattggatgaaagcacaggatacattgactatgaccagttggaggcatcggctaaactc 697
Query: 661 ttcaggccaaaattaattgttgcgggagctagtgcttatgcccgtctatatgattatgac 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttcag-ccaaaattaattgttgcgggagctagtgcttatgcccgtctatatgattatgac 756
Query: 721 cgcatacgcaaggtgtgtgataaacaaaaagctgtgttgttggcagatatggcacacatt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 cgcatacgcaaggtgtgtgataaacaaaaagctgtgttgttggcagatatggcacacatt 816
Query: 781 agtggattggttgctgctggtgttatcccttcaccttttgattatgcagatgttgtgact 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 agtggattggttgctgctggtgttatcccttcaccttttgattatgcagatgttgtgact 876
Query: 841 accacaacccacaagtcacttcgtggaccccgtggggctatgatcttcttcaggaagggg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 accacaacccacaagtcacttcgtggaccccgtggggctatgatcttcttcaggaagggg 936
Query: 901 gtgaaagaaatcaacaaacaaggaaaggaggtgctgtatgactatgaggacaaaatcaac 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 gtgaaagaaatcaacaaacaaggaaaggaggtgctgtatgactatgaggacaaaatcaac 996
Query: 961 caagccgttttcccaggactgcaagggggtcctcacaaccatacaattactggtttagct 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 caagccgttttcccaggactgcaagggggtcctcacaaccatacaattactggtttagct 1056
Query: 1021 gttgcattgaagcaggctacaactccagagtataaagcatatcaagagcaggttctcagt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 gttgcattgaagcaggctacaactccagagtataaagcatatcaagagcaggttctcagt 1116
Query: 1081 aattgctcaaaatttgcacaggctctgagtgagaggggctatgagcttgtttccggtgga 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 aattgctcaaaatttgcacaggctctgagtgagaggggctatgagcttgtttccggtgga 1176
Query: 1141 actgagaatcatctagttttggtgaatctgaagaacaagggtattgatggctccagagtt 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 actgagaatcatctagttttggtgaatctgaagaacaagggtattgatggctccagagtt 1236
Query: 1201 gagaaggtgttggaatcagttcacattgcagcaaataaaaacaccgttccgggagatgtg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 gagaaggtgttggaatcagttcacattgcagcaaataaaaacaccgttccgggagatgtg 1296
Query: 1261 tctgctatggttcctggtggcatccggatgggaactcctgctcttacttctaggggattc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 tctgctatggttcctggtggcatccggatgggaactcctgctcttacttctaggggattc 1356
Query: 1321 gttgaggaggattttgttaaggtagctgagttttttgatgcagctgtaaacttggctttg 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 gttgaggaggattttgttaaggtagctgagttttttgatgcagctgtaaacttggctttg 1416
Query: 1381 aaggccaaggcagagagcaaaggaacaaaattgaaggacttcttggccacaattcaggaa 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 aaggccaaggcagagagcaaaggaacaaaattgaaggacttcttggccacaattcaggaa 1476
Query: 1441 tcatcttactttcaaacagagattgcaaagcttcgccacgatgttgaggagtatgcgaaa 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 tcatcttactttcaaacagagattgcaaagcttcgccacgatgttgaggagtatgcgaaa 1536
Query: 1501 cagtttccaaccattggttttgagaaggcaacaatgaagtacaaagaatgagaa 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 cagtttccaaccattggttttgagaaggcaacaatgaagtacaaagaatgagaa 1590
>gnl|LJGI|TC77069 similar to UniRef100_P34899 Cluster: Serine
hydroxymethyltransferase, mitochondrial precursor; n=1;
Pisum sativum|Rep: Serine hydroxymethyltransferase,
mitochondrial precursor - Pisum sativum (Garden pea),
partial (39%)
Length = 979
Score = 926 bits (467), Expect = 0.0
Identities = 474/475 (99%), Gaps = 1/475 (0%)
Strand = Plus / Plus
Query: 1 atggcaatggcaatggcgcttcgcaggctttcatcttccatcgacaagcctttacgtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 atggcaatggcaatggcgcttcgcaggctttcatcttccatcgacaagcctttacgtcct 105
Query: 61 ctcttcaacgcttcctctgtttactacaagtcctctttgcctgatgaagctgtctacgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ctcttcaacgcttcctctgtttactacaagtcctctttgcctgatgaagctgtctacgag 165
Query: 121 aaaacaactgttacgtggccaaagcaattgaatgctccactcgaggttgttgatcctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aaaacaactgttacgtggccaaagcaattgaatgctccactcgaggttgttgatcctgaa 225
Query: 181 attgctgatatcattgagcatgagaaa-gctagacaatggaaggggctggagctgatacc 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 226 attgctgatatcattgagcatgagaaaagctagacaatggaaggggctggagctgatacc 285
Query: 240 ctcagagaatttcacttctctctctgtaatgcaagctgttggctctgtcatgacaaacaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctcagagaatttcacttctctctctgtaatgcaagctgttggctctgtcatgacaaacaa 345
Query: 300 atacagtgaaggatatcccggtgcaagatactatggtggaaatgagtttattgacatggc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atacagtgaaggatatcccggtgcaagatactatggtggaaatgagtttattgacatggc 405
Query: 360 agaaacactatgccagaagcgtgccttggaagcatttaggttggatccagcaaaatgggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agaaacactatgccagaagcgtgccttggaagcatttaggttggatccagcaaaatgggg 465
Query: 420 agtgaatgtgcagcctttgtctggttctccttccaattttcatgtttatactgca 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agtgaatgtgcagcctttgtctggttctccttccaattttcatgtttatactgca 520
Score = 313 bits (158), Expect = 2e-84
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 1397 gcaaaggaacaaaattgaaggacttcttggccacaattcaggaatcatcttactttcaaa 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gcaaaggaacaaaattgaaggacttcttggccacaattcaggaatcatcttactttcaaa 577
Query: 1457 cagagattgcaaagcttcgccacgatgttgaggagtatgcgaaacagtttccaaccattg 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cagagattgcaaagcttcgccacgatgttgaggagtatgcgaaacagtttccaaccattg 637
Query: 1517 gttttgagaaggcaacaatgaagtacaaagaatgagaa 1554
||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gttttgagaaggcaacaatgaagtacaaagaatgagaa 675
>gnl|LJGI|FS340433 homologue to UniRef100_A9PL06 Cluster: Mitochondrial serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Mitochondrial serine hydroxymethyltransferase - Populus
tremuloides (Quaking aspen), partial (46%)
Length = 804
Score = 333 bits (168), Expect = 2e-90
Identities = 480/584 (82%)
Strand = Plus / Plus
Query: 202 gagaaagctagacaatggaaggggctggagctgataccctcagagaatttcacttctctc 261
||||||||| | ||||||||||| |||| || ||||| || ||||||||||| || ||
Sbjct: 218 gagaaagctcgtcaatggaagggattggaacttataccttcggagaatttcacgtcgctg 277
Query: 262 tctgtaatgcaagctgttggctctgtcatgacaaacaaatacagtgaaggatatcccggt 321
|| || |||||||||||||| || || ||||| || |||||||||||||| ||||| |||
Sbjct: 278 tcggtgatgcaagctgttggatcggtgatgacgaataaatacagtgaagggtatcctggt 337
Query: 322 gcaagatactatggtggaaatgagtttattgacatggcagaaacactatgccagaagcgt 381
|| ||||||||||| |||||||||| ||||||||||| || || | || |||||||||
Sbjct: 338 gctagatactatggaggaaatgagtacattgacatggccgagaccttgtgtcagaagcgt 397
Query: 382 gccttggaagcatttaggttggatccagcaaaatggggagtgaatgtgcagcctttgtct 441
|| | ||||| ||| ||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct: 398 gcacttgaagcttttgggttggatccagcaaaatggggagtcaatgtgcagtcgttgtct 457
Query: 442 ggttctccttccaattttcatgtttatactgcattgctaaaacctcatgatagaatcatg 501
||||| ||||| || || || ||||| ||||| || | ||||||||||| ||||| |||
Sbjct: 458 ggttccccttctaacttccaagtttacactgctttattgaaacctcatgaaagaattatg 517
Query: 502 gcacttgatcttcctcatggagggcatctttctcacggttaccagactgacaccaaaaag 561
||||| |||||||| ||||| |||||||| || || || || |||||||||||||| |||
Sbjct: 518 gcactcgatcttccccatggtgggcatctatcacatggctatcagactgacaccaagaag 577
Query: 562 atatccgcggtctctatattttttgagacaatgccatatagattggatgaaagcacagga 621
||||| || || || ||||| ||||| |||||||| || |||||| |||| | || ||
Sbjct: 578 atatcagctgtatcgatattctttgaaacaatgccgtacagattgaatgagactactggt 637
Query: 622 tacattgactatgaccagttggaggcatcggctaaactcttcaggccaaaattaattgtt 681
|| ||||| ||||||||| ||||| | ||| ||| || |||||||| ||||||||
Sbjct: 638 tatattgattatgaccagatggagaaaagtgctgcactttttaggccaaagttaattgtc 697
Query: 682 gcgggagctagtgcttatgcccgtctatatgattatgaccgcatacgcaaggtgtgtgat 741
|| || |||||||||||||| || || ||||||||||| || || || ||||| ||||||
Sbjct: 698 gctggtgctagtgcttatgctcgcctttatgattatgaacgtattcgtaaggtctgtgat 757
Query: 742 aaacaaaaagctgtgttgttggcagatatggcacacattagtgg 785
||||| || || || ||||||| |||||||||||||| |||||
Sbjct: 758 aaacagaaggcagtaatgttggctgatatggcacacatcagtgg 801
>gnl|LJGI|TC64633 homologue to UniRef100_Q45FE6 Cluster: Serine
hydroxymethyltransferase; n=1; Medicago truncatula|Rep:
Serine hydroxymethyltransferase - Medicago truncatula
(Barrel medic), partial (46%)
Length = 1012
Score = 232 bits (117), Expect = 5e-60
Identities = 406/497 (81%), Gaps = 4/497 (0%)
Strand = Plus / Plus
Query: 841 accacaacccacaagtcacttcgtggaccccgtggggctatgatcttcttcaggaagggg 900
|||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6 accacaacacataagtcacttcgtggaccacgtggggctatgatcttcttcaggaagggt 65
Query: 901 gtgaaagaaatcaacaaacaaggaaaggaggtgctgtatgactatgaggacaaaatcaac 960
||||| ||||| ||||| |||| |||| ||| |||||||||| || |||||||| ||
Sbjct: 66 gtgaaggaaataaacaagaaagggcaggaagtgttgtatgactacgaagacaaaataaat 125
Query: 961 caagccgttttcccaggactgcaagggggtcctcacaaccatacaattactggtttagct 1020
|| || ||||| || ||||| ||||| ||||||||||| || || ||||| || || ||
Sbjct: 126 caggctgtttttcctggacttcaaggtggtcctcacaatcacactattacaggcttggca 185
Query: 1021 gttgcattgaagcaggctacaactccagagtataaagca-tatcaagagcaggttctcag 1079
|||||| |||||||||||| || ||||| | | ||| | || ||| | || || || ||
Sbjct: 186 gttgcactgaagcaggctatgacgccagaat-tcaagaattaccaaaaacaagtgcttag 244
Query: 1080 taattgctcaaaatttgcacaggctctgagtgagaggggctatgagcttgtttccggtgg 1139
||| | ||| ||||||||| | ||| |||| |||||||| ||||| || |||||
Sbjct: 245 taactcctcggcttttgcacagagtttgatagagaaaggctatgaacttgtatctggtgg 304
Query: 1140 aactgagaatcatctagttttggtgaatctgaag-aacaagggtattgatggctccagag 1198
|||||| || ||| |||| |||||||| || ||| |||||||| || |||||||| || |
Sbjct: 305 aactgaaaaccatttagtgttggtgaa-cttaagaaacaagggcatcgatggctcaaggg 363
Query: 1199 ttgagaaggtgttggaatcagttcacattgcagcaaataaaaacaccgttccgggagatg 1258
|||| |||||||| ||||||||||| || || || |||||||| || ||||| || ||||
Sbjct: 364 ttgaaaaggtgttagaatcagttcatatagctgccaataaaaatactgttccaggggatg 423
Query: 1259 tgtctgctatggttcctggtggcatccggatgggaactcctgctcttacttctaggggat 1318
||||||||||| |||| || |||||||| |||||||| |||||||| || || ||||| |
Sbjct: 424 tgtctgctatgattcccggaggcatccgaatgggaacccctgctctcacatccaggggtt 483
Query: 1319 tcgttgaggaggatttt 1335
|| ||||||||||||||
Sbjct: 484 tcattgaggaggatttt 500