Miyakogusa Predicted Gene
- Lj2g3v1414960.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1414960.1 Non Chatacterized Hit- tr|I3SBY2|I3SBY2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=3
SV=1,98.59,2e-33,RNA_POL_N_8KD,RNA polymerases, subunit N, zinc
binding site; RNA polymerase subunit RPB10,RNA polyme,CUFF.36986.1
(219 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68363 homologue to UniRef100_Q39290 Cluster: DNA-dire... 434 e-122
gnl|LJGI|TC66211 homologue to UniRef100_Q39290 Cluster: DNA-dire... 387 e-107
gnl|LJGI|TC71215 homologue to UniRef100_Q39290 Cluster: DNA-dire... 371 e-102
gnl|LJGI|FS347855 homologue to UniRef100_A7P1N3 Cluster: Chromos... 297 1e-80
>gnl|LJGI|TC68363 homologue to UniRef100_Q39290 Cluster: DNA-directed RNA polymerases
I, II, and III subunit RPABC5; n=1; Brassica napus|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC5 - Brassica napus (Rape), complete
Length = 690
Score = 434 bits (219), Expect = e-122
Identities = 219/219 (100%)
Strand = Plus / Plus
Query: 1 atgatcatccccgtccgttgtttcacatgtggaaaggtcattggaaacaaatgggatccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 atgatcatccccgtccgttgtttcacatgtggaaaggtcattggaaacaaatgggatccc 119
Query: 61 tatctggatcttctgcagtctgattacagtgaaggagatgcgttggatgctttggggcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tatctggatcttctgcagtctgattacagtgaaggagatgcgttggatgctttggggcta 179
Query: 121 gttcgatactgttgtaggcgcatgcttatgacccatgttgacctcattgagaagctgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gttcgatactgttgtaggcgcatgcttatgacccatgttgacctcattgagaagctgctg 239
Query: 181 aattacaacactctggacaagtctgataccagttaagaa 219
|||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aattacaacactctggacaagtctgataccagttaagaa 278
>gnl|LJGI|TC66211 homologue to UniRef100_Q39290 Cluster: DNA-directed RNA polymerases
I, II, and III subunit RPABC5; n=1; Brassica napus|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC5 - Brassica napus (Rape), complete
Length = 604
Score = 387 bits (195), Expect = e-107
Identities = 213/219 (97%)
Strand = Plus / Plus
Query: 1 atgatcatccccgtccgttgtttcacatgtggaaaggtcattggaaacaaatgggatccc 60
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 87 atgatcatccccgtccgttgtttcacctgtggaaaggtcatcggaaacaaatgggatccc 146
Query: 61 tatctggatcttctgcagtctgattacagtgaaggagatgcgttggatgctttggggcta 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 147 tatctggatcttctgcagtctgattacagtgaaggagatgcattggatgctttgggtcta 206
Query: 121 gttcgatactgttgtaggcgcatgcttatgacccatgttgacctcattgagaagctgctg 180
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 207 gttcgatattgttgtaggcgcatgcttatgacccatgttgacctcatcgagaagctgctg 266
Query: 181 aattacaacactctggacaagtctgataccagttaagaa 219
|||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aattacaacactctggacaagtctgataccagttaagaa 305
>gnl|LJGI|TC71215 homologue to UniRef100_Q39290 Cluster: DNA-directed RNA polymerases
I, II, and III subunit RPABC5; n=1; Brassica napus|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC5 - Brassica napus (Rape), complete
Length = 612
Score = 371 bits (187), Expect = e-102
Identities = 211/219 (96%)
Strand = Plus / Plus
Query: 1 atgatcatccccgtccgttgtttcacatgtggaaaggtcattggaaacaaatgggatccc 60
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 67 atgattatccccgtccgttgtttcacctgtggaaaggtcattggaaacaaatgggatcca 126
Query: 61 tatctggatcttctgcagtctgattacagtgaaggagatgcgttggatgctttggggcta 120
||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 127 tatttggatcttctgcagtcagattacagtgaaggagatgcactggatgctttggggcta 186
Query: 121 gttcgatactgttgtaggcgcatgcttatgacccatgttgacctcattgagaagctgctg 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 187 gttcgatactgttgtaggcgcatgcttatgacccacgttgacctcattgagaagctgctg 246
Query: 181 aattacaacactctggacaagtctgataccagttaagaa 219
|||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aattacaacactctggacaagtctgataccagttaagaa 285
>gnl|LJGI|FS347855 homologue to UniRef100_A7P1N3 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (46%)
Length = 704
Score = 297 bits (150), Expect = 1e-80
Identities = 162/166 (97%)
Strand = Plus / Plus
Query: 54 ggatccctatctggatcttctgcagtctgattacagtgaaggagatgcgttggatgcttt 113
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 461 ggatccctatctggatcttctgcagtctgattacagtgaaggagatgcattggatgcttt 520
Query: 114 ggggctagttcgatactgttgtaggcgcatgcttatgacccatgttgacctcattgagaa 173
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 521 gggtctagttcgatattgttgtaggcgcatgcttatgacccatgttgacctcatcgagaa 580
Query: 174 gctgctgaattacaacactctggacaagtctgataccagttaagaa 219
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gctgctgaattacaacactctggacaagtctgataccagttaagaa 626