Miyakogusa Predicted Gene
- Lj2g3v1389280.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1389280.1 tr|A9SGD1|A9SGD1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_212057,44.9,1e-17,no description,Zinc finger,
RING/FYVE/PHD-type; ZF_RING_1,Zinc finger, RING-type, conserved site;
se,NODE_42364_length_1842_cov_34.508144.path2.1
(1275 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS340335 weakly similar to UniRef100_A7QAB4 Cluster: Ch... 1479 0.0
gnl|LJGI|FS341545 homologue to UniRef100_A6WFR3 Cluster: Binding... 450 e-125
gnl|LJGI|TC77571 293 1e-78
gnl|LJGI|TC72529 similar to UniRef100_A7QAB4 Cluster: Chromosome... 174 9e-43
gnl|LJGI|GO040908 similar to UniRef100_A7QAB4 Cluster: Chromosom... 139 5e-32
>gnl|LJGI|FS340335 weakly similar to UniRef100_A7QAB4 Cluster: Chromosome undetermined
scaffold_70, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_70, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (31%)
Length = 749
Score = 1479 bits (746), Expect = 0.0
Identities = 746/746 (100%)
Strand = Plus / Plus
Query: 19 aaagatgagataatggacattgaccatggagaaacccctgattccttttgttgctccgtt 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aaagatgagataatggacattgaccatggagaaacccctgattccttttgttgctccgtt 63
Query: 79 tgcctggatctattatacaagcccattgtactatcttgtggtcacatgtgctgtttctgg 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tgcctggatctattatacaagcccattgtactatcttgtggtcacatgtgctgtttctgg 123
Query: 139 tgtgtctataaatcaatgaattgtctacgagagtctcagtgtccaatatgtaggcaccaa 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgtgtctataaatcaatgaattgtctacgagagtctcagtgtccaatatgtaggcaccaa 183
Query: 199 tactatcactttccaacagtctgccaaatgcttcactttttgcttcttaaggtctatcct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tactatcactttccaacagtctgccaaatgcttcactttttgcttcttaaggtctatcct 243
Query: 259 gttgcgtacaccagaaggataaatcaaactcttgaggaagaaaagaaatcgggcttctat 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gttgcgtacaccagaaggataaatcaaactcttgaggaagaaaagaaatcgggcttctat 303
Query: 319 tcccctgaatttgatcctgatacatgtgaatcccaagctaaatttggtcattctggtagc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcccctgaatttgatcctgatacatgtgaatcccaagctaaatttggtcattctggtagc 363
Query: 379 ccttcttcctcctctattacacatctcgtgcccagcttatgcaacgtgggaacttctgaa 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccttcttcctcctctattacacatctcgtgcccagcttatgcaacgtgggaacttctgaa 423
Query: 439 ggtatggaacaatcaaagtccaccaaccatgaaggagacgatggcaccatccattctaaa 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ggtatggaacaatcaaagtccaccaaccatgaaggagacgatggcaccatccattctaaa 483
Query: 499 cgctcttccattggagaagctgaaattattgggactcctattaaaggacaaaaatcgtct 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cgctcttccattggagaagctgaaattattgggactcctattaaaggacaaaaatcgtct 543
Query: 559 caggatgagctttgcccaccacagaaattgtcagttgcagatgtgatgtgtataatgtgc 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 caggatgagctttgcccaccacagaaattgtcagttgcagatgtgatgtgtataatgtgc 603
Query: 619 aagcaacttctctgtcaacctgtagttcttaattgtggccatgtatactgtgaaacttgt 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aagcaacttctctgtcaacctgtagttcttaattgtggccatgtatactgtgaaacttgt 663
Query: 679 gtcatcaagttagctgatgagatgcttagatgccaagtttgccaaagtccgcatccaaga 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gtcatcaagttagctgatgagatgcttagatgccaagtttgccaaagtccgcatccaaga 723
Query: 739 ggatttccaaaagtgtgtttggagtt 764
||||||||||||||||||||||||||
Sbjct: 724 ggatttccaaaagtgtgtttggagtt 749
>gnl|LJGI|FS341545 homologue to UniRef100_A6WFR3 Cluster: Binding-protein-dependent
transport systems inner membrane component; n=1;
Kineococcus, partial (4%)
Length = 648
Score = 450 bits (227), Expect = e-125
Identities = 227/227 (100%)
Strand = Plus / Plus
Query: 292 gaggaagaaaagaaatcgggcttctattcccctgaatttgatcctgatacatgtgaatcc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaggaagaaaagaaatcgggcttctattcccctgaatttgatcctgatacatgtgaatcc 481
Query: 352 caagctaaatttggtcattctggtagcccttcttcctcctctattacacatctcgtgccc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 caagctaaatttggtcattctggtagcccttcttcctcctctattacacatctcgtgccc 541
Query: 412 agcttatgcaacgtgggaacttctgaaggtatggaacaatcaaagtccaccaaccatgaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agcttatgcaacgtgggaacttctgaaggtatggaacaatcaaagtccaccaaccatgaa 601
Query: 472 ggagacgatggcaccatccattctaaacgctcttccattggagaagc 518
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggagacgatggcaccatccattctaaacgctcttccattggagaagc 648
Score = 359 bits (181), Expect = 3e-98
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 112 tcttgtggtcacatgtgctgtttctggtgtgtctataaatcaatgaattgtctacgagag 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tcttgtggtcacatgtgctgtttctggtgtgtctataaatcaatgaattgtctacgagag 196
Query: 172 tctcagtgtccaatatgtaggcaccaatactatcactttccaacagtctgccaaatgctt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tctcagtgtccaatatgtaggcaccaatactatcactttccaacagtctgccaaatgctt 256
Query: 232 cactttttgcttcttaaggtctatcctgttgcgtacaccagaaggataaatcaaactctt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cactttttgcttcttaaggtctatcctgttgcgtacaccagaaggataaatcaaactctt 316
Query: 292 g 292
|
Sbjct: 317 g 317
Score = 165 bits (83), Expect = 8e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 atggagaacagcgaattcaaagatgagataatggacattgaccatggagaaacccctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 atggagaacagcgaattcaaagatgagataatggacattgaccatggagaaacccctgat 114
Query: 61 tccttttgttgctccgtttgcct 83
|||||||||||||||||||||||
Sbjct: 115 tccttttgttgctccgtttgcct 137
>gnl|LJGI|TC77571
Length = 723
Score = 293 bits (148), Expect = 1e-78
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 1128 taacataatgttgaggctggtcacgggacagttaggggacagttccattgtcaatgagtc 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taacataatgttgaggctggtcacgggacagttaggggacagttccattgtcaatgagtc 60
Query: 1188 tttagaaaatctggaatttccatctgaagcctccggtttgtttgatgatggagaagataa 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttagaaaatctggaatttccatctgaagcctccggtttgtttgatgatggagaagataa 120
Query: 1248 ccagaatgatcctgaagctaccagttga 1275
||||||||||||||||||||||||||||
Sbjct: 121 ccagaatgatcctgaagctaccagttga 148
>gnl|LJGI|TC72529 similar to UniRef100_A7QAB4 Cluster: Chromosome undetermined
scaffold_70, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_70, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (21%)
Length = 742
Score = 174 bits (88), Expect = 9e-43
Identities = 229/276 (82%)
Strand = Plus / Plus
Query: 69 ttgctccgtttgcctggatctattatacaagcccattgtactatcttgtggtcacatgtg 128
||||| |||||||||||||||| ||||||||||||| ||||||||||| ||||| | |
Sbjct: 145 ttgctgcgtttgcctggatctactatacaagcccatcgtactatcttgcggtcatgtttc 204
Query: 129 ctgtttctggtgtgtctataaatcaatgaattgtctacgagagtctcagtgtccaatatg 188
|||||||||||||||| | || |||||| || || | || || ||||| |||||||||||
Sbjct: 205 ctgtttctggtgtgtccacaagtcaatggatggtttgcgtgaatctcattgtccaatatg 264
Query: 189 taggcaccaatactatcactttccaacagtctgccaaatgcttcactttttgcttcttaa 248
||||| | ||||||||||||||||||| |||| |||||| |||| ||||||| |||||
Sbjct: 265 caggcatccatactatcactttccaacaatctgtcaaatgtttcatgttttgctccttaa 324
Query: 249 ggtctatcctgttgcgtacaccagaaggataaatcaaactcttgaggaagaaaagaaatc 308
| |||||||||||| ||| ||||| ||| || || |||||||||||| |||||
Sbjct: 325 gatctatcctgttgattaccagagaagagaaaagcagacacttgaggaagaagagaaaga 384
Query: 309 gggcttctattcccctgaatttgatcctgatacatg 344
||||| | ||||||| |||||||| ||||||||||
Sbjct: 385 gggctatttttcccctcaatttgatgctgatacatg 420
>gnl|LJGI|GO040908 similar to UniRef100_A7QAB4 Cluster: Chromosome undetermined
scaffold_70, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_70, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(16%)
Length = 567
Score = 139 bits (70), Expect = 5e-32
Identities = 157/186 (84%)
Strand = Plus / Minus
Query: 928 gttcatattggagttggttgtgatttttgcgggatgtatcctatcattggagatagatat 987
||||| || |||||||| || ||||||||||||||||| || || | ||| || ||||||
Sbjct: 425 gttcacatgggagttggatgcgatttttgcgggatgtacccaataactggggacagatat 366
Query: 988 aaatgcgaggactgtaaggagaagatgggttttgatctttgtggtgattgctatgacacc 1047
| ||| | || |||||||||||||| ||||||||||| ||| || |||||||| | |||
Sbjct: 365 agatgtgctgattgtaaggagaagattggttttgatctctgtagttattgctataaaacc 306
Query: 1048 cgttccaagcttccaggccgatttaatcaacaacacacctcagagcacagattcaagctt 1107
||||| ||||||||||||||||||||||| ||||||||| | || |||| ||| |||||
Sbjct: 305 cgttcaaagcttccaggccgatttaatcagcaacacacccctgaacacaagttccagctt 246
Query: 1108 gtacaa 1113
||||||
Sbjct: 245 gtacaa 240