Miyakogusa Predicted Gene

Lj2g3v1389020.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1389020.1 Non Chatacterized Hit- tr|K2S280|K2S280_MACPH
Uncharacterized protein OS=Macrophomina phaseolina
(st,26.58,2.1,seg,NULL,CUFF.36922.1
         (318 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP041637                                                      80   9e-15
gnl|LJGI|BP055890 similar to UniRef100_Q95HN6 Cluster: MHC class...    60   9e-09

>gnl|LJGI|BP041637 
          Length = 457

 Score = 79.8 bits (40), Expect = 9e-15
 Identities = 80/92 (86%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 143 catgtactgctacttcaatccataatggtacatttgaatcctcaccatctccta-ctcct 201
           ||||||||||| ||||||| ||| || || ||||||||||||||||||||||||  || |
Sbjct: 13  catgtactgctccttcaatacattatagttcatttgaatcctcaccatctcctatttctt 72

                                           
Query: 202 tccaatgtttcacttcattctccttattcacc 233
           ||| |||||||| ||| ||||||| |||||||
Sbjct: 73  tcccatgtttcagttccttctcctcattcacc 104


>gnl|LJGI|BP055890 similar to UniRef100_Q95HN6 Cluster: MHC class I chain-related
           protein A; n=4; Homo sapiens|Rep: MHC class I
           chain-related protein A - Homo sapiens (Human), partial
           (5%)
          Length = 542

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 6   atctcttattccgctttctaattctctaaagatgttaaattt 47
           ||||| |||||| |||||||||||||||||||||| ||||||
Sbjct: 336 atctcctattccactttctaattctctaaagatgtaaaattt 295