Miyakogusa Predicted Gene

Lj2g3v1377620.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1377620.1 Non Chatacterized Hit- tr|I1MP54|I1MP54_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,48.28,0.0002,seg,NULL,CUFF.36870.1
         (231 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62388 weakly similar to UniRef100_A7Q622 Cluster: Chr...    68   2e-11
gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Ch...    52   1e-06

>gnl|LJGI|TC62388 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
           scaffold_54, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (14%)
          Length = 833

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 145 ccacccatcatcgaattcggcaagattctaactacccttgtgaagacgaagcaatactcc 204
           ||||||||||||||||||  ||||||| ||||| |||| ||||||| |||||| ||||||
Sbjct: 478 ccacccatcatcgaattcaacaagattttaacttccctcgtgaagatgaagcattactcc 537

             
Query: 205 ac 206
           ||
Sbjct: 538 ac 539


>gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
           scaffold_54, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (21%)
          Length = 766

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 149 ccatcatcgaattcggcaagattctaactacccttgtgaagacgaagcaatactccac 206
           ||||||||||||| || |||||| |||| ||||| ||||||| |||||| ||| ||||
Sbjct: 203 ccatcatcgaatttggtaagattttaaccaccctcgtgaagatgaagcattaccccac 260