Miyakogusa Predicted Gene
- Lj2g3v1373360.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1373360.1 tr|Q6Z867|Q6Z867_ORYSJ RNA recognition motif
(RRM)-containing protein-like OS=Oryza sativa subsp.
ja,42.37,2e-17,RRM_1,RNA recognition motif domain; seg,NULL;
RNA-binding domain, RBD,NULL; no description,Nucleotid,CUFF.36859.1
(633 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57342 similar to UniRef100_A7Q2I2 Cluster: Chromosome... 981 0.0
gnl|LJGI|DC597622 similar to UniRef100_A7Q2I2 Cluster: Chromosom... 912 0.0
gnl|LJGI|TC64369 weakly similar to UniRef100_A7Q2I2 Cluster: Chr... 452 e-126
gnl|LJGI|TC58506 similar to UniRef100_A7Q2I0 Cluster: Chromosome... 198 3e-50
gnl|LJGI|AV769520 52 4e-06
>gnl|LJGI|TC57342 similar to UniRef100_A7Q2I2 Cluster: Chromosome chr1 scaffold_46,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_46, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (20%)
Length = 1097
Score = 981 bits (495), Expect = 0.0
Identities = 498/499 (99%)
Strand = Plus / Plus
Query: 1 atgaacacaaacattatgctgaagcgaggtcttgaaagcttgaccagcacggcagcaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 atgaacacaaacattatgctgaagcgaggtcttgaaagcttgaccagcacggcagcaacc 123
Query: 61 accagattctcctcctgcttgtctcttcggttgttccgttccgacgccgctgctgctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 124 accagattctcctcctgcttgtctcttcggttgttccgttccgacgccgttgctgctgcc 183
Query: 121 gtgaacgcccctgcttcttcggttctgaacaccgtcaacccccacactcctatttatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gtgaacgcccctgcttcttcggttctgaacaccgtcaacccccacactcctatttatgct 243
Query: 181 ggagttatcccaattggaggtcgagtgcgtttggcgaacctgccgaagaaaaggaacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggagttatcccaattggaggtcgagtgcgtttggcgaacctgccgaagaaaaggaacatt 303
Query: 241 gacagggacctgaaatcagctatgcaaggggttccgggcataataaatatagttccagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gacagggacctgaaatcagctatgcaaggggttccgggcataataaatatagttccagct 363
Query: 301 gttactggaaacaagaagacaagggatcctatctgcaagggttttgcttttgttgatttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gttactggaaacaagaagacaagggatcctatctgcaagggttttgcttttgttgatttc 423
Query: 361 aagcgcaaaaaggatgcagttaggtgtgtagagttgtgcgctggacaaactataactttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aagcgcaaaaaggatgcagttaggtgtgtagagttgtgcgctggacaaactataactttt 483
Query: 421 ggcaaaattcagaagcaaataaaatgtgaggttgttaatgcacagtcttcctcttcttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggcaaaattcagaagcaaataaaatgtgaggttgttaatgcacagtcttcctcttcttct 543
Query: 481 ctccagttaagcaaaaatc 499
|||||||||||||||||||
Sbjct: 544 ctccagttaagcaaaaatc 562
Score = 224 bits (113), Expect = 5e-58
Identities = 127/134 (94%)
Strand = Plus / Plus
Query: 500 atttccaaaaagaaagtnnnnnnngttttagaaattcctggatcagcaaagaggttgaag 559
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 634 atttccaaaaagaaagtaaaaaaagttttagaaattcctggatcagcaaagaggttgaag 693
Query: 560 atcgagaagaagtctatattaactcgtattttctccaagtacggatcaagacctgttgtt 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 atcgagaagaagtctatattaactcgtattttctccaagtacggatcaagacctgttgtt 753
Query: 620 gcttcaaaggataa 633
||||||||||||||
Sbjct: 754 gcttcaaaggataa 767
>gnl|LJGI|DC597622 similar to UniRef100_A7Q2I2 Cluster: Chromosome chr1 scaffold_46,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_46, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 575
Score = 912 bits (460), Expect = 0.0
Identities = 470/472 (99%), Gaps = 1/472 (0%)
Strand = Plus / Plus
Query: 1 atgaacacaaacattatgctgaagcgaggtcttgaaagcttgaccagcacggcagcaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 atgaacacaaacattatgctgaagcgaggtcttgaaagcttgaccagcacggcagcaacc 164
Query: 61 accagattctcctcctgcttgtctcttcggttgttccgttccgacgccgctgctgctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 accagattctcctcctgcttgtctcttcggttgttccgttccgacgccgctgctgctgcc 224
Query: 121 gtgaacgcccctgcttcttcggttctgaacaccgtcaacccccacactcctatttatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gtgaacgcccctgcttcttcggttctgaacaccgtcaacccccacactcctatttatgct 284
Query: 181 ggagttatcccaattggaggtcgagtgcgtttggcgaacctgccgaagaaaaggaacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ggagttatcccaattggaggtcgagtgcgtttggcgaacctgccgaagaaaaggaacatt 344
Query: 241 gacagggacctgaaatcagctatgcaaggggttccgggcataataaatatagttccagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gacagggacctgaaatcagctatgcaaggggttccgggcataataaatatagttccagct 404
Query: 301 gttactggaaacaagaagacaagggatcctatctgcaagggttttgcttttgttgatttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gttactggaaacaagaagacaagggatcctatctgcaagggttttgcttttgttgatttc 464
Query: 361 aagcgcaaaaaggatgcagttaggtgtgtagagttgtgcgctggacaaactataactttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aagcgcaaaaaggatgcagttaggtgtgtagagttgtgcgctggacaaactataactttt 524
Query: 421 ggcaaaattcagaagcaaataaaatgtgaggttgttaatgcacagtcttcct 472
||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 525 ggcaaaattcaaaagc-aataaaatgtgaggttgttaatgcacagtcttcct 575
>gnl|LJGI|TC64369 weakly similar to UniRef100_A7Q2I2 Cluster: Chromosome chr1
scaffold_46, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_46, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (42%)
Length = 1678
Score = 452 bits (228), Expect = e-126
Identities = 300/324 (92%)
Strand = Plus / Plus
Query: 176 atgctggagttatcccaattggaggtcgagtgcgtttggcgaacctgccgaagaaaagga 235
|||||| |||| | ||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 640 atgctgaagttgttccacttggaggtcgagtgcttttggcgaacctgccgaagaaaaaga 699
Query: 236 acattgacagggacctgaaatcagctatgcaaggggttccgggcataataaatatagttc 295
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 700 acatccacagggacctgaaatcagctatgcaaggggttccgggcataataaatatagctc 759
Query: 296 cagctgttactggaaacaagaagacaagggatcctatctgcaagggttttgcttttgttg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cagctgttactggaaacaagaagacaagggatcctatctgcaagggttttgcttttgttg 819
Query: 356 atttcaagcgcaaaaaggatgcagttaggtgtgtagagttgtgcgctggacaaactataa 415
|||| ||| |||||||||||||||||||| ||||||||| | | |||| |||||| |||
Sbjct: 820 attttaaggacaaaaaggatgcagttaggtttgtagagttatacactgggcaaactctaa 879
Query: 416 cttttggcaaaattcagaagcaaataaaatgtgaggttgttaatgcacagtcttcctctt 475
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 880 cttttggcaaaattcagaagcaaataaaatgcgaggttgtaaatgcacagtcttcatctt 939
Query: 476 cttctctccagttaagcaaaaatc 499
|||||| |||||||||||||||
Sbjct: 940 cttctcctgagttaagcaaaaatc 963
Score = 129 bits (65), Expect = 2e-29
Identities = 115/134 (85%)
Strand = Plus / Plus
Query: 500 atttccaaaaagaaagtnnnnnnngttttagaaattcctggatcagcaaagaggttgaag 559
||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 1278 atttccaaaaagaaagtaaaaaaggttttagaaattcctggatcagcaaaaaggttgaag 1337
Query: 560 atcgagaagaagtctatattaactcgtattttctccaagtacggatcaagacctgttgtt 619
||| || ||||| || |||||||| | ||||||||||||||||| |||| ||||| ||
Sbjct: 1338 atcaaggagaaggctgtattaactgatgttttctccaagtacggaaaaagagctgttctt 1397
Query: 620 gcttcaaaggataa 633
||||||||||||||
Sbjct: 1398 gcttcaaaggataa 1411
>gnl|LJGI|TC58506 similar to UniRef100_A7Q2I0 Cluster: Chromosome chr1 scaffold_46,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_46, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (65%)
Length = 926
Score = 198 bits (100), Expect = 3e-50
Identities = 136/148 (91%)
Strand = Plus / Plus
Query: 15 tatgctgaagcgaggtcttgaaagcttgaccagcacggcagcaaccaccagattctcctc 74
|||| |||||| ||| || | |||||||||||||||||||| ||||||||||||||||||
Sbjct: 14 tatgatgaagccagggctcgcaagcttgaccagcacggcagtaaccaccagattctcctc 73
Query: 75 ctgcttgtctcttcggttgttccgttccgacgccgctgctgctgccgtgaacgcccctgc 134
||||| |||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct: 74 ctgctcgtctctccggttgttctgttccgacgccgctgctgctgacgtggacgcccctgc 133
Query: 135 ttcttcggttctgaacaccgtcaacccc 162
||||||||||||||| ||||||||||||
Sbjct: 134 ttcttcggttctgaagaccgtcaacccc 161
>gnl|LJGI|AV769520
Length = 362
Score = 52.0 bits (26), Expect = 4e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 588 ttttctccaagtacggatcaagacctgttgttgcttcaaaggataa 633
||||||||||||||| | |||| ||||| ||||||||||||||||
Sbjct: 343 ttttctccaagtacgaaaaaagagctgttcttgcttcaaaggataa 298