Miyakogusa Predicted Gene
- Lj2g3v1365820.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1365820.1 tr|G7K5N2|G7K5N2_MEDTR ATP-dependent RNA helicase
DOB1 OS=Medicago truncatula GN=MTR_5g036660 PE=4
S,79.85,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2, ATP-binding
domain; HELICASE_CTER,Helicase, C-termina,CUFF.36828.1
(3537 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO040294 similar to UniRef100_A7Q2K9 Cluster: Chromosom... 1263 0.0
gnl|LJGI|TC79295 similar to UniRef100_A7Q2K9 Cluster: Chromosome... 813 0.0
>gnl|LJGI|GO040294 similar to UniRef100_A7Q2K9 Cluster: Chromosome chr1 scaffold_46,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_46, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (20%)
Length = 641
Score = 1263 bits (637), Expect = 0.0
Identities = 640/641 (99%)
Strand = Plus / Minus
Query: 1358 agggttgtgacgccgcagtgcaatatattgaagattgcaaacttttagacgagtgtgaaa 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agggttgtgacgccgcagtgcaatatattgaagattgcaaacttttagacgagtgtgaaa 582
Query: 1418 aaagtgaggtcgaacttgccttgaagaggttccgcattcagtatcctgatgctgtcagag 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aaagtgaggtcgaacttgccttgaagaggttccgcattcagtatcctgatgctgtcagag 522
Query: 1478 aaacagctgtgaaaggacttttacagggggttgccgcacatcatgcaggatgtctacctt 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaacagctgtgaaaggacttttacagggggttgccgcacatcatgcaggatgtctacctt 462
Query: 1538 tgtggaaagcattcatagaagaattgtttcaaaaaggactagtcaaagttgtttttgcta 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgtggaaagcattcatagaagaattgtttcaaaaaggactagtcaaagttgtttttgcta 402
Query: 1598 cagagaccctggctgctggaatcaatatgcctgctagaaccgctgttatttcatccctca 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cagagaccctggctgctggaatcaatatgcctgctagaaccgctgttatttcatccctca 342
Query: 1658 gcaaaagaattgatagtggacgtagaccattaagctcaaatgaactgcttcagatggccg 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gcaaaagaattgatagtggacgtagaccattaagctcaaatgaactgcttcagatggccg 282
Query: 1718 ggcgtgcaggacgcagaggcattgatgaaagtggccatgtagtcctcatccagactccta 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggcgtgcaggacgcagaggcattgatgaaagtggccatgtagtcctcatccagactccta 222
Query: 1778 atgaaggcgctgaagagtgctgcaaggtactgtttgctggactagagcctctagtgtcac 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atgaaggcgctgaagagtgctgcaaggtactgtttgctggactagagcctctagtgtcac 162
Query: 1838 agtttactgcttcatatggaatggttttaaatcttctttctggagtgaaagccattcaca 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 agtttactgcttcatatggaatggttttaaatcttctttctggagtgaaagccattcaca 102
Query: 1898 ggtcaaacgaatcagatgacatgagacaatccacaggggggagaactttggaagatgcta 1957
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 101 ggtcaaacgaatcagatgacatgagacaatccacagggggaagaactttggaagatgcta 42
Query: 1958 ggaagttagttgagcaaagttttggaaattatgttagtagc 1998
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 ggaagttagttgagcaaagttttggaaattatgttagtagc 1
>gnl|LJGI|TC79295 similar to UniRef100_A7Q2K9 Cluster: Chromosome chr1 scaffold_46,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_46, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 612
Score = 813 bits (410), Expect = 0.0
Identities = 482/497 (96%), Gaps = 7/497 (1%)
Strand = Plus / Plus
Query: 3048 aattcgaggagaaaatgagctttggcttgcaatggttcttcgtagtaaaattttagtagg 3107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattcgaggagaaaatgagctttggcttgcaatggttcttcgtagtaaaattttagtagg 60
Query: 3108 attaaaacctccacagcttgctgcagtgtgtgcaggtttggtgtccgagggtatcaaagt 3167
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 attaaaacctccacagcttgctncagtgtgtgcaggtttggtgtccgagggtatcaaagt 120
Query: 3168 cagaccctggaaaaacaacagttttatctatgagccttctgcaactgtagtcaattgcat 3227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagaccctggaaaaacaacagttttatctatgagccttctgcaactgtagtcaattgcat 180
Query: 3228 agggttactgggtgagcaaagaagcgccttattggcaatt-caggagaaa-cacggggta 3285
||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 181 agggttactgggtgagccaagaagcgccttattggcaattccaggagaaaccacggggta 240
Query: 3286 actatatcttgctgtttggatacccagttctgtggtatggttgaggcatgggcttctggg 3345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 actatatcttgctgtttggatacccagttctgtggtatggttgaggcatgggcttctggg 300
Query: 3346 ttaaca-tggagagaaataatgatggattgtgcaatggatgatggtgatctagctcgtct 3404
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 301 ttaacactggagagaaataatgatggattgtgccatggatgatggtgatctagctcgtct 360
Query: 3405 cctgcgacggaccattgatctattagctcagattccaaaattggcagatattgatccatt 3464
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 361 cctgcgacggacccttgatctattagctcagattcccaaattggcagatattgatccatt 420
Query: 3465 gttg-cagcgcaatgcaagggctgcttctgatgtcatgga-caggcct-ccaataag-tg 3520
|||| |||||| |||| ||||||||||||||||||||||| ||||||| || ||||| ||
Sbjct: 421 gttgccagcgccatgccagggctgcttctgatgtcatggaccaggcctccccataagctg 480
Query: 3521 agcttgctgggtagttt 3537
|||||||||||||||||
Sbjct: 481 agcttgctgggtagttt 497