Miyakogusa Predicted Gene

Lj2g3v1278950.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1278950.2 Non Chatacterized Hit- tr|B9S5L8|B9S5L8_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,38.85,5e-19,HLH, helix-loop-helix DNA-binding
domain,Helix-loop-helix domain; seg,NULL; helix loop helix
domain,,CUFF.36682.2
         (558 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81164 similar to UniRef100_Q7U8H9 Cluster: Possible A...    92   4e-18

>gnl|LJGI|TC81164 similar to UniRef100_Q7U8H9 Cluster: Possible ABC transporter
           involved in polysaccharide efflux; n=1; Synechococcus
           sp. WH 8102|Rep: Possible ABC transporter involved in
           polysaccharide efflux - Synechococcus sp. (strain
           WH8102), partial (8%)
          Length = 626

 Score = 91.7 bits (46), Expect = 4e-18
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                       
Query: 208 cgagagctgcttcaggaaacggaagcaacctcaaaagaagtagcaaagccaaagataaat 267
           |||||||| |||||||| ||||||| | |||||||||||||| |||||||||||||| ||
Sbjct: 231 cgagagctacttcaggagacggaagtagcctcaaaagaagtaacaaagccaaagatagat 172

                     
Query: 268 gattttgatc 277
           ||||||||||
Sbjct: 171 gattttgatc 162