Miyakogusa Predicted Gene
- Lj2g3v1277660.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1277660.1 tr|Q259U2|Q259U2_ORYSA H0913C04.2 protein
OS=Oryza sativa GN=H0913C04.2 PE=3 SV=1,51.35,3e-19,A_tha_TIGR01569:
plant integral membrane protein T,Uncharacterised protein family
UPF0497, trans-mem,CUFF.36657.1
(561 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61056 weakly similar to UniRef100_A7PMY7 Cluster: Chr... 1104 0.0
gnl|LJGI|TC59581 weakly similar to UniRef100_A7PMY7 Cluster: Chr... 72 4e-12
>gnl|LJGI|TC61056 weakly similar to UniRef100_A7PMY7 Cluster: Chromosome chr14
scaffold_21, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_21, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (89%)
Length = 941
Score = 1104 bits (557), Expect = 0.0
Identities = 560/561 (99%)
Strand = Plus / Plus
Query: 1 atgaagggaggttcaattgaaattggtgaagtgtcaaagggtgcatcccaaagaaaaggg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 80 atgaagggaggttcaattgaaattggtaaagtgtcaaagggtgcatcccaaagaaaaggg 139
Query: 61 atgaagagaggattgtctataatggactttattttgagaattgtggcagctgctgcaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atgaagagaggattgtctataatggactttattttgagaattgtggcagctgctgcaaca 199
Query: 121 ctaggtggtgcagtgggcatgggaacagctgaagagagccttccatttgtcactaacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctaggtggtgcagtgggcatgggaacagctgaagagagccttccatttgtcactaacttt 259
Query: 181 atgcaattcagggctgaatatgatgaccttccttcatttgtgttttttgtgctggctaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgcaattcagggctgaatatgatgaccttccttcatttgtgttttttgtgctggctaac 319
Query: 241 tctcttgtctgtggctaccttgtgctctcactcatactatctgtcttccacatagtcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctcttgtctgtggctaccttgtgctctcactcatactatctgtcttccacatagtcaga 379
Query: 301 agctctgcagttaaaagtagagttctcctcattgtttttgacacggtgatgctgggtctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agctctgcagttaaaagtagagttctcctcattgtttttgacacggtgatgctgggtctc 439
Query: 361 ctcatagcaggagcatctgcagcagcagccattgtgtatctagctcataatggaaactca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcatagcaggagcatctgcagcagcagccattgtgtatctagctcataatggaaactca 499
Query: 421 aaagccaattggttcccaatttgccagcaattcaacaattactgccaacaagcttcaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagccaattggttcccaatttgccagcaattcaacaattactgccaacaagcttcaggt 559
Query: 481 tcagtggttggatcttacattgctgttgcgtttctcatcatactaattctcctatcagca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcagtggttggatcttacattgctgttgcgtttctcatcatactaattctcctatcagca 619
Query: 541 gcagcaatctctcgacactga 561
|||||||||||||||||||||
Sbjct: 620 gcagcaatctctcgacactga 640
>gnl|LJGI|TC59581 weakly similar to UniRef100_A7PMY7 Cluster: Chromosome chr14
scaffold_21, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_21, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (89%)
Length = 809
Score = 71.9 bits (36), Expect = 4e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 51 aagaaaagggatgaagagaggattgtctataatggactttattttgagaattgtggcagc 110
|||||||||||||| ||||| | || ||||||||||||||||||||||||||||||||
Sbjct: 67 aagaaaagggatgataagaggtctctcaataatggactttattttgagaattgtggcagc 126