Miyakogusa Predicted Gene
- Lj2g3v1252790.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1252790.1 Non Chatacterized Hit- tr|E1ZD94|E1ZD94_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,27.7,3e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
PPR,Pentatricopeptide repeat; PPR: pentatricopeptid,CUFF.36592.1
(1833 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61355 similar to UniRef100_A7PB53 Cluster: Chromosome... 1029 0.0
gnl|LJGI|TC70628 636 0.0
gnl|LJGI|TC68092 weakly similar to UniRef100_A7P2G4 Cluster: Chr... 412 e-114
gnl|LJGI|DC595399 66 8e-10
>gnl|LJGI|TC61355 similar to UniRef100_A7PB53 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (34%)
Length = 811
Score = 1029 bits (519), Expect = 0.0
Identities = 536/542 (98%), Gaps = 6/542 (1%)
Strand = Plus / Plus
Query: 166 gcttccggcagccctctttacggcgagaattggcggaaccccaatccacgcccctccgcc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gcttccggcagccctctttacggcgagaattggcggaaccccaatccacgcccctccgcc 329
Query: 226 tcctccagcgcc------atcgcccccctcggctacaccggccgcaccacattgtcggaa 279
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcctccagcgccatcgccatcgcccccctcggctacaccggccgcaccacattgtcggaa 389
Query: 280 tcctacgactccctcgagctccagaacttgttcggtgaatacatggcgtcgcagaaatgg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcctacgactccctcgagctccagaacttgttcggtgaatacatggcgtcgcagaaatgg 449
Query: 340 gatgaagtcaaggatctgttcgaggcttgggtgaggtctctcgacaagaatgggaagcct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gatgaagtcaaggatctgttcgaggcttgggtgaggtctctcgacaagaatgggaagcct 509
Query: 400 aacatgcctgatgttaacctctacaatcactacctcagggccaacctcatgatcggagcc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aacatgcctgatgttaacctctacaatcactacctcagggccaacctcatgatcggagcc 569
Query: 460 tccgcggctgagttgctcgacatccttgctcagatggatgatttcaacgtcgtccctaat 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tccgcggctgagttgctcgacatccttgctcagatggatgatttcaacgtcgtccctaat 629
Query: 520 acggcatcgtttaacctcgtcctcaagtctatgcatcaagctggtgaaacctttgctgct 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 acggcatcgtttaacctcgtcctcaagtctatgcatcaagctggtgaaacctttgctgct 689
Query: 580 gagaaactcctcgaacggatgctggagtcgggaaatgaatctctccctgatgatgaatca 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gagaaactcctcgaacggatgctggagtcgggaaatgaatctctccctgatgatgaatca 749
Query: 640 tatgacttggtcattggaatgctctttctaacggaccagattgatgctgcattcaaatat 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tatgacttggtcattggaatgctctttctaacggaccagattgatgctgcattcaaatat 809
Query: 700 at 701
||
Sbjct: 810 at 811
Score = 186 bits (94), Expect = 3e-46
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 atgtcacaaatggcgatcctccatcgatctcgcttccttctctccaaacccaccgccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 atgtcacaaatggcgatcctccatcgatctcgcttccttctctccaaacccaccgccatc 164
Query: 61 cgtaccatcgccacattccccttcctctctcaag 94
||||||||||||||||||||||||||||||||||
Sbjct: 165 cgtaccatcgccacattccccttcctctctcaag 198
>gnl|LJGI|TC70628
Length = 582
Score = 636 bits (321), Expect = 0.0
Identities = 336/341 (98%)
Strand = Plus / Plus
Query: 169 tccggcagccctctttacggcgagaattggcggaaccccaatccacgcccctccgcctcc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tccggcagccctctttacggcgagaattggcggaaccccaatccacgcccctccgcctcc 301
Query: 229 tccagcgccatcgcccccctcggctacaccggccgcaccacattgtcggaatcctacgac 288
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tccagcaccatcgcccccctcggctacaccggccgcaccacattgtcggaatcctacgac 361
Query: 289 tccctcgagctccagaacttgttcggtgaatacatggcgtcgcagaaatgggatgaagtc 348
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 362 tccctcgagcttcagaacttgttcggtgaatacatggcgtcgcagaaatgggatgaggtg 421
Query: 349 aaggatctgttcgaggcttgggtgaggtctctcgacaagaatgggaagcctaacatgcct 408
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 422 aaggatctgttcgaggcttgggtgaggtctctcgacaaaaatgggaagcctaacatgcct 481
Query: 409 gatgttaacctctacaatcactacctcagggccaacctcatgatcggagcctccgcggct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gatgttaacctctacaatcactacctcagggccaacctcatgatcggagcctccgcggct 541
Query: 469 gagttgctcgacatccttgctcagatggatgatttcaacgt 509
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gagttgctcgacatccttgctcagatggatgatttcaacgt 582
Score = 186 bits (94), Expect = 3e-46
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 atgtcacaaatggcgatcctccatcgatctcgcttccttctctccaaacccaccgccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 atgtcacaaatggcgatcctccatcgatctcgcttccttctctccaaacccaccgccatc 139
Query: 61 cgtaccatcgccacattccccttcctctctcaag 94
||||||||||||||||||||||||||||||||||
Sbjct: 140 cgtaccatcgccacattccccttcctctctcaag 173
>gnl|LJGI|TC68092 weakly similar to UniRef100_A7P2G4 Cluster: Chromosome chr1
scaffold_5, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 792
Score = 412 bits (208), Expect = e-114
Identities = 225/233 (96%)
Strand = Plus / Plus
Query: 1601 ttaaccgggatgtcaaatctgctctgtcagttgttgatgatatgttggctgctggttttc 1660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaaccgggatgtcaaatttgctctgtcagttgttgatgatatgttggctgctggttttc 60
Query: 1661 aaccgacgaaagagattcttnnnnnnntaagaaggcgatgcatacgcgagatggactatg 1720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 aaccgacgaaagagattcttaaaaaaataagaaggcgatgcatacgcgagatggactatg 120
Query: 1721 agactaacgacagactggaactgcttgctcgagatctgaattaccgattgggtgcagaag 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agactaacgacagactggaactgcttgctcgagatctgaattaccgattgggtgcagaag 180
Query: 1781 cccggcaaaacattttgtttaatcttaattacagtatggattatgcttgaaag 1833
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cccggcaaaacattttgtttaatcttaattacagtatggattatgcttgaaag 233
>gnl|LJGI|DC595399
Length = 267
Score = 65.9 bits (33), Expect = 8e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 50 ccaccgccatccgtaccatcgccacattccccttcctctctcaa 93
||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct: 159 ccaccnccatccataccatcaccacattccccttcctctctcaa 202