Miyakogusa Predicted Gene

Lj2g3v1252520.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1252520.1 Non Chatacterized Hit- tr|F6HCQ5|F6HCQ5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,62.86,1e-18,DUF1675,Protein of unknown function DUF1675;
coiled-coil,NULL; seg,NULL; SUBFAMILY NOT NAMED,NULL; F,CUFF.36567.1
         (1149 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC597082 similar to UniRef100_A7P2E8 Cluster: Chromosom...   131   1e-29
gnl|LJGI|AV774032 UniRef100_Q16GV6 Cluster: Wd-repeat protein; n...    98   1e-19
gnl|LJGI|BW616862 similar to UniRef100_A7PAA1 Cluster: Chromosom...    62   8e-09

>gnl|LJGI|DC597082 similar to UniRef100_A7P2E8 Cluster: Chromosome chr1 scaffold_5,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr1 scaffold_5, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (6%)
          Length = 156

 Score =  131 bits (66), Expect = 1e-29
 Identities = 73/74 (98%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1076 ctggtggtggcgatgttgctcacccacttaggcagattgttgtaaacccttctggtgctc 1135
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156  ctggtggtggcgatgt-gctcacccacttaggcagattgttgtaaacccttctggtgctc 98

                          
Query: 1136 cctttttgtgatgg 1149
            ||||||||||||||
Sbjct: 97   cctttttgtgatgg 84


>gnl|LJGI|AV774032 UniRef100_Q16GV6 Cluster: Wd-repeat protein; n=1; Aedes
           aegypti|Rep: Wd-repeat protein - Aedes aegypti, partial
           (0%)
          Length = 458

 Score = 97.6 bits (49), Expect = 1e-19
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                
Query: 1   atgaagatggagaaggacccgagagatctgcttcagagattcctcgtgtcaag 53
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 406 atgaagatggagaagtacccgagagatctgcttcagagattcctcgtgtcaag 458


>gnl|LJGI|BW616862 similar to UniRef100_A7PAA1 Cluster: Chromosome chr14 scaffold_9,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_9, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (24%)
          Length = 477

 Score = 61.9 bits (31), Expect = 8e-09
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 317 cggagactgaggaggagtggaggaagcggaagaagttgcagacgctg 363
           ||||||| ||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 399 cggagacagaggaagagtggaggaagaggaaggagttgcagacgctg 445