Miyakogusa Predicted Gene
- Lj2g3v1240070.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1240070.1 tr|G7JEN3|G7JEN3_MEDTR UDP-glucuronate
4-epimerase OS=Medicago truncatula GN=MTR_4g024600 PE=4
SV=1,92.95,0,NAD(P)-binding Rossmann-fold domains,NULL; seg,NULL; no
description,NAD(P)-binding domain; no
descri,NODE_37482_length_1955_cov_79.545265.path2.1
(1318 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58078 similar to UniRef100_A7PYE7 Cluster: Chromosome... 1082 0.0
gnl|LJGI|TC61079 718 0.0
gnl|LJGI|TC58317 similar to UniRef100_Q9STI6 Cluster: UDP-glucur... 163 3e-39
gnl|LJGI|TC81011 similar to UniRef100_Q9LIS3 Cluster: UDP-glucur... 101 1e-20
gnl|LJGI|TC72474 similar to UniRef100_Q9STI6 Cluster: UDP-glucur... 90 4e-17
gnl|LJGI|FS334731 similar to UniRef100_Q70IJ4 Cluster: Branched-... 80 4e-14
gnl|LJGI|TC70758 similar to UniRef100_Q304Y2 Cluster: UDP-glucur... 52 9e-06
>gnl|LJGI|TC58078 similar to UniRef100_A7PYE7 Cluster: Chromosome chr15 scaffold_37,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_37, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 783
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 1 atgtctcagctgaagcaaatgtcgcacaccgatagtgccccttcgacgccggggaagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atgtctcagctgaagcaaatgtcgcacaccgatagtgccccttcgacgccggggaagttc 297
Query: 61 aagatggagaaggcctcctacttcaaccgcgcacggtggcacgcctcgccggcgaagctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aagatggagaaggcctcctacttcaaccgcgcacggtggcacgcctcgccggcgaagctc 357
Query: 121 gccttgtggtcaatcgttttctcggcggcgatcttgatcttctttttccggtcgccggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gccttgtggtcaatcgttttctcggcggcgatcttgatcttctttttccggtcgccggcg 417
Query: 181 acgtcatctatctccgctgatccctcccggcgttccctcaggacatccaactggggcggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 acgtcatctatctccgctgatccctcccggcgttccctcaggacatccaactggggcggt 477
Query: 241 ccggtctgggagaagaaggttcggtcctctgccagggtccggtccaggaatggattctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccggtctgggagaagaaggttcggtcctctgccagggtccggtccaggaatggattctcc 537
Query: 301 gttctggtcaccggcgccgcgggtttcgtcgggacacatgtgtccgccgccttgaagcgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gttctggtcaccggcgccgcgggtttcgtcgggacacatgtgtccgccgccttgaagcgc 597
Query: 361 cgcggtgatggggtgctgggaattgacaacttcaatgactactatgacccttctctgaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cgcggtgatggggtgctgggaattgacaacttcaatgactactatgacccttctctgaag 657
Query: 421 cgttcacgccaggccctgttggagcgtaccggggtgttcattgtggaaggtgatatcaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgttcacgccaggccctgttggagcgtaccggggtgttcattgtggaaggtgatatcaat 717
Query: 481 gatgctgcgctgttgaagaagctctttgaggttgtgccgttcacgcatgtgatgcatttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gatgctgcgctgttgaagaagctctttgaggttgtgccgttcacgcatgtgatgcatttg 777
Query: 541 gctgct 546
||||||
Sbjct: 778 gctgct 783
>gnl|LJGI|TC61079
Length = 800
Score = 718 bits (362), Expect = 0.0
Identities = 380/386 (98%)
Strand = Plus / Plus
Query: 933 tcatggcaccgttgcgagggattttacttacattgatgacattgtgaggcgctgcttggg 992
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tcatggcaccgttgctagggattttacttacattgatgacattgtgaggggctgcttggg 60
Query: 993 tgcgttggataccgcggagaagagcactggcagtggcgggaagaagaaggggccggcgca 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcgttggataccgcggagaagagcactggcagtggcgggaagaagaaggggccggcgca 120
Query: 1053 gttgagggggttcaatctggggaatacttctccggtcccggtgagcgagcttgagagcat 1112
|||||||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||||
Sbjct: 121 gttgagggtgttcaatctggggaatacttctcctgtcccggtgagtgagcttgtgagcat 180
Query: 1113 tttggagaggctgttgaaggttaaggcgaagaggaacgtgatgaggttgccgcggaatgg 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttggagaggctgttgaaggttaaggcgaagaggaacgtgatgaggttgccgcggaatgg 240
Query: 1173 ggatgtgcagtttactcatgcaaacattagctacgcgcagagggagcttgggtataagcc 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggatgtgcagtttactcatgcaaacattagctacgcgcagagggagcttgggtataagcc 300
Query: 1233 tgtcacagatcttcaggctggtttgaagaaatttgtgcggtggtacctgaactactattc 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtcacagatcttcaggctggtttgaagaaatttgtgcggtggtacctgaactactattc 360
Query: 1293 tggtgggaagaaagctgttgagtgac 1318
||||||||||||||||||||||||||
Sbjct: 361 tggtgggaagaaagctgttgagtgac 386
>gnl|LJGI|TC58317 similar to UniRef100_Q9STI6 Cluster: UDP-glucuronate 4-epimerase 5;
n=1; Arabidopsis thaliana|Rep: UDP-glucuronate
4-epimerase 5 - Arabidopsis thaliana (Mouse-ear cress),
partial (89%)
Length = 1902
Score = 163 bits (82), Expect = 3e-39
Identities = 385/486 (79%)
Strand = Plus / Plus
Query: 670 tcttctagctcagtttatgggttgaatactaaggtccccttttctgagaaggataggact 729
||||||||||| ||||| ||||||||| | ||||| || || || |||||||| || ||
Sbjct: 823 tcttctagctctgtttacgggttgaattccaaggttccgttctccgagaaggacagaacg 882
Query: 730 gaccagcctgctagcttgtatgctgctactaagaaggccggtgaagagactgctcatact 789
|||||||| || || | || || || || |||||||||||||||| | ||| || |||
Sbjct: 883 gaccagccggcgagtctctacgcggcgacgaagaaggccggtgaagcaattgcgcacact 942
Query: 790 tataaccatatatacggcatttccttgaccggtttgaggttcttcactgtttatggacct 849
|| || | || || ||| | ||| || |||||| |||||||||| || ||||| |||
Sbjct: 943 tacaataacatttatggcttatccaccactggtttgcggttcttcacggtgtatggtcct 1002
Query: 850 tggggtaggcctgacatggcctacttcttcttcactaaggatattttgaaggggaagagc 909
|||||| | ||||||||||| || ||||||||||| ||||||||| |||||||||||
Sbjct: 1003 tggggtcgacctgacatggcgtatttcttcttcaccaaggatattctgaaggggaagcag 1062
Query: 910 atccccatctttgaggctgcgaatcatggcaccgttgcgagggattttacttacattgat 969
|| | ||||||| || | || ||| | |||||| || || || || |||||||||
Sbjct: 1063 attactgtctttgaagcccctgatggtggaagcgttgctagagacttcacctacattgat 1122
Query: 970 gacattgtgaggcgctgcttgggtgcgttggataccgcggagaagagcactggcagtggc 1029
|||||||||| | | || || || || ||||||| ||| ||||||| ||||| |||||
Sbjct: 1123 gacattgtgaaggggtgtttaggggctctggatacggcgaagaagagtactggtagtgga 1182
Query: 1030 gggaagaagaaggggccggcgcagttgagggggttcaatctggggaatacttctccggtc 1089
|| |||||||||||||| || |||| ||| |||||| ||||||| ||||| |||||
Sbjct: 1183 ggtaagaagaaggggcctgcacagtataggattttcaatttggggaacacttcgccggtg 1242
Query: 1090 ccggtgagcgagcttgagagcattttggagaggctgttgaaggttaaggcgaagaggaac 1149
|||||||| ||||||| |||||| ||||||| ||| ||||||| ||||||||||||||
Sbjct: 1243 ccggtgagtgagcttgtgagcatattggagaagcttctgaaggtgaaggcgaagaggaag 1302
Query: 1150 gtgatg 1155
||||||
Sbjct: 1303 gtgatg 1308
>gnl|LJGI|TC81011 similar to UniRef100_Q9LIS3 Cluster: UDP-glucuronate 4-epimerase 6;
n=1; Arabidopsis thaliana|Rep: UDP-glucuronate
4-epimerase 6 - Arabidopsis thaliana (Mouse-ear cress),
partial (33%)
Length = 520
Score = 101 bits (51), Expect = 1e-20
Identities = 114/135 (84%)
Strand = Plus / Plus
Query: 961 tacattgatgacattgtgaggcgctgcttgggtgcgttggataccgcggagaagagcact 1020
||||| |||||||| |||| | | ||||| || || |||| || ||||||||||||||
Sbjct: 96 tacatcgatgacatcgtgaagggatgcttaggagcactggacacggcggagaagagcacc 155
Query: 1021 ggcagtggcgggaagaagaaggggccggcgcagttgagggggttcaatctggggaatact 1080
||||| |||||||||||||||||||||||||||||||| | || ||| || ||||| |||
Sbjct: 156 ggcagcggcgggaagaagaaggggccggcgcagttgagagtgtacaacctcgggaacact 215
Query: 1081 tctccggtcccggtg 1095
|| ||||| ||||||
Sbjct: 216 tcgccggtgccggtg 230
>gnl|LJGI|TC72474 similar to UniRef100_Q9STI6 Cluster: UDP-glucuronate 4-epimerase 5;
n=1; Arabidopsis thaliana|Rep: UDP-glucuronate
4-epimerase 5 - Arabidopsis thaliana (Mouse-ear cress),
partial (25%)
Length = 590
Score = 89.7 bits (45), Expect = 4e-17
Identities = 129/157 (82%)
Strand = Plus / Plus
Query: 988 ttgggtgcgttggataccgcggagaagagcactggcagtggcgggaagaagaaggggccg 1047
||||| || |||||||| ||| ||||||| ||||| ||||| || ||||||||||||||
Sbjct: 23 ttgggggctttggatacggcgaagaagagtactggtagtggaggaaagaagaaggggcca 82
Query: 1048 gcgcagttgagggggttcaatctggggaatacttctccggtcccggtgagcgagcttgag 1107
|| ||||| |||| |||||| ||||||| ||||| ||||| ||||||| |||||||
Sbjct: 83 gctcagtttagggttttcaatttggggaacacttcgccggtgccggtgactgagcttgtt 142
Query: 1108 agcattttggagaggctgttgaaggttaaggcgaaga 1144
| || ||||||| ||| ||||||||||||| ||||
Sbjct: 143 aagatattggagaagcttctgaaggttaaggctaaga 179
>gnl|LJGI|FS334731 similar to UniRef100_Q70IJ4 Cluster: Branched-chain amino acid
permease protein; n=1; Rhizobium etli|Rep:
Branched-chain amino acid permease protein - Rhizobium
etli, partial (17%)
Length = 808
Score = 79.8 bits (40), Expect = 4e-14
Identities = 119/142 (83%), Gaps = 5/142 (3%)
Strand = Plus / Plus
Query: 567 tatggagaatcctggctcttatgtgcatagtaacattgctggttttgtcaatttgcttga 626
|||||||||||| |||||| || |||| ||| |||||||||||||||||||| | | |
Sbjct: 276 tatggagaatcccggctct---gttcatactaaaattgctggttttgtcaatttacctta 332
Query: 627 ggtttgtaagactgtgaaccctcaacctgctattgtgtgggctt-cttctagctcagttt 685
||||||||||||| |||| |||||| | ||||||||| || ||||||||||||| |
Sbjct: 333 ggtttgtaagactatgaagcctcaa-ttactattgtgtcaatttgcttctagctcagtat 391
Query: 686 atgggttgaatactaaggtccc 707
| |||||||||||||||||||
Sbjct: 392 aaaggttgaatactaaggtccc 413
>gnl|LJGI|TC70758 similar to UniRef100_Q304Y2 Cluster: UDP-glucuronic acid 4-epimerase;
n=1; Zea mays|Rep: UDP-glucuronic acid 4-epimerase - Zea
mays (Maize), partial (94%)
Length = 2248
Score = 52.0 bits (26), Expect = 9e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1111 attttggagaggctgttgaaggttaaggcgaagaggaacgtg 1152
||||||||| ||| |||||||| ||||||||||||||||||
Sbjct: 1256 attttggaggggcatttgaaggtgaaggcgaagaggaacgtg 1297