Miyakogusa Predicted Gene
- Lj2g3v1226760.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1226760.1 tr|Q8S4L3|Q8S4L3_SOLLC MADS-box transcription
factor MADS-rin OS=Solanum lycopersicum PE=2
SV=1,43.3,0.0000000000001,coiled-coil,NULL; seg,NULL;
K_BOX,Transcription factor, K-box; MADS BOX PROTEIN,NULL;
K-box,Transcri,gene.g41080.t1.1
(417 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|NP7225997 GB|AY770396.1|AAX13297.1 MADS box protein AP1... 577 e-164
gnl|LJGI|TC76874 UniRef100_Q533S8 Cluster: MADS box protein AP1a... 246 9e-65
>gnl|LJGI|NP7225997 GB|AY770396.1|AAX13297.1 MADS box protein AP1b;LjAP1b; A function
protein; includes MADS, I, K, and C domains;
AP1/SQUA-like
Length = 1122
Score = 577 bits (291), Expect = e-164
Identities = 291/291 (100%)
Strand = Plus / Plus
Query: 1 atggagaagattctggaacgccatgaaaggtacaactatgcagagagacagctagcagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atggagaagattctggaacgccatgaaaggtacaactatgcagagagacagctagcagga 325
Query: 61 aatgcagataattctgatgaacaggtaaattggactatagaatatactagactcaagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatgcagataattctgatgaacaggtaaattggactatagaatatactagactcaagtca 385
Query: 121 aagattgacctcttgcagagaaaccacaggcactatgttggagaggatttggatacaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aagattgacctcttgcagagaaaccacaggcactatgttggagaggatttggatacaatg 445
Query: 181 agtctcaaagagcttcaatgcctggagcagcagttagatactgctctcaagaacatccgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtctcaaagagcttcaatgcctggagcagcagttagatactgctctcaagaacatccgt 505
Query: 241 acacgcagaaatcaagtgatgtacgattctatttctgaccttcagaaaaag 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acacgcagaaatcaagtgatgtacgattctatttctgaccttcagaaaaag 556
Score = 248 bits (125), Expect = 2e-65
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 289 aagatcaaggagaaagagaaagagaaagctgtagcacaggaggctcctcaattggagcag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aagatcaaggagaaagagaaagagaaagctgtagcacaggaggctcctcaattggagcag 655
Query: 349 ccaaattacagggttgatacatccttcttactgcaccaagaaccccttcccactttgaac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ccaaattacagggttgatacatccttcttactgcaccaagaaccccttcccactttgaac 715
Query: 409 atggg 413
|||||
Sbjct: 716 atggg 720
>gnl|LJGI|TC76874 UniRef100_Q533S8 Cluster: MADS box protein AP1a; n=1; Lotus
japonicus|Rep: MADS box protein AP1a - Lotus japonicus,
complete
Length = 1382
Score = 246 bits (124), Expect = 9e-65
Identities = 249/291 (85%), Gaps = 6/291 (2%)
Strand = Plus / Plus
Query: 1 atggagaagattctggaacgccatgaaaggtacaactatgcagagagacagctagcagga 60
||||||||||| ||||| ||| |||||||||| |||||||||||||||||||| | |
Sbjct: 477 atggagaagatactggagcgctatgaaaggtatgcctatgcagagagacagctagttgca 536
Query: 61 aatgcagataattctgatgaacaggtaaattggactatagaatatactagactcaagtca 120
|||| ||||||| ||||| |||||||||||| || ||||||||||||||| ||
Sbjct: 537 aatg------attctgaatcacagggaaattggactattgagtatactagactcaaggca 590
Query: 121 aagattgacctcttgcagagaaaccacaggcactatgttggagaggatttggatacaatg 180
||||||||||| |||||||| ||||||||||||||| | ||||| ||||||| | |||||
Sbjct: 591 aagattgaccttttgcagaggaaccacaggcactatatgggagaagatttgggttcaatg 650
Query: 181 agtctcaaagagcttcaatgcctggagcagcagttagatactgctctcaagaacatccgt 240
||||||||||| ||||| | |||||||||||||||||||||||||||||| |||| |||
Sbjct: 651 agtctcaaagaacttcagagtctggagcagcagttagatactgctctcaagcacattcgt 710
Query: 241 acacgcagaaatcaagtgatgtacgattctatttctgaccttcagaaaaag 291
||||||||||| ||| | |||||||| || ||||| || ||||||||||||
Sbjct: 711 acacgcagaaaccaactcatgtacgagtccatttcggagcttcagaaaaag 761