Miyakogusa Predicted Gene
- Lj2g3v1201300.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1201300.1 tr|D7M9J0|D7M9J0_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_656166
PE,41.88,2e-19,RING/U-box,NULL; seg,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; PUTATIVE UNCHARACTERIZED ,CUFF.36617.1
(414 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW619319 weakly similar to UniRef100_A7NUS9 Cluster: Ch... 454 e-127
gnl|LJGI|TC78125 similar to UniRef100_Q84KA9 Cluster: RING/C3HC4... 176 7e-44
gnl|LJGI|AV421731 weakly similar to UniRef100_Q6K5E4 Cluster: RI... 119 1e-26
>gnl|LJGI|BW619319 weakly similar to UniRef100_A7NUS9 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 475
Score = 454 bits (229), Expect = e-127
Identities = 238/241 (98%)
Strand = Plus / Plus
Query: 174 cgcgttccccatcggcgccagcaacgggcgccaccgcggactcgacccggagatcatcga 233
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 221 cgcgttccccatcggcggcagcaactggcgccaccgcggactcgacccggagatcatcga 280
Query: 234 ttccttccccaccttcgtttactccgccgtgaagggcctcaaaatcggaagggccacgct 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttccttccccaccttcgtttactccgccgtgaagggcctcaaaatcggaagggccacgct 340
Query: 294 ggaatgcgtcgtttgcctcaacgagttcggcgaccatgaaacgctgcgttcgattccgaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggaatgcgtcgtttgcctcaacgagttcggcgaccatgaaacgctgcgttcgattccgaa 400
Query: 354 gtgcagccacgttttccacgccgaatgcgtcgatgcttggctggtgaaccactctacctg 413
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 401 gtgcagccacgttttccacgccgaatgcgtcgatgcttggctggtgagccactctacctg 460
Query: 414 a 414
|
Sbjct: 461 a 461
Score = 319 bits (161), Expect = 8e-87
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 8 aaaaatctgggttagatctaatccttctcatcctcctcctcctcacgctccctccgccgc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaatctgggttagatctaatccttctcatcctcctcctcctcacgctccctccgccgc 60
Query: 68 cggccaccgcacagctaccaaacgtgctctttagactcaagttcgacaagtccatggcca 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggccaccgcacagctaccaaacgtgctctttagactcaagttcgacaagtccatggcca 120
Query: 128 ttgtcttcgtgatcctggtagtcgtgttcttcatgctgggc 168
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgtcttcgtgatcctggtagtcgtgttcttcatgctgggc 161
>gnl|LJGI|TC78125 similar to UniRef100_Q84KA9 Cluster: RING/C3HC4/PHD zinc
finger-like protein; n=2; Cucumis melo|Rep:
RING/C3HC4/PHD zinc finger-like protein - Cucumis melo
(Muskmelon), partial (27%)
Length = 793
Score = 176 bits (89), Expect = 7e-44
Identities = 128/141 (90%)
Strand = Plus / Plus
Query: 273 caaaatcggaagggccacgctggaatgcgtcgtttgcctcaacgagttcggcgaccatga 332
||||||||||||||| ||||||||||||| ||| ||| | |||||||| ||||||||||
Sbjct: 1 caaaatcggaagggcgacgctggaatgcgccgtgtgcttgaacgagtttcgcgaccatga 60
Query: 333 aacgctgcgttcgattccgaagtgcagccacgttttccacgccgaatgcgtcgatgcttg 392
||||||||||| ||||||||||||||| || || |||||||||||||||||||| |||||
Sbjct: 61 aacgctgcgtttgattccgaagtgcagtcatgtcttccacgccgaatgcgtcgacgcttg 120
Query: 393 gctggtgaaccactctacctg 413
|||||||||||| ||||||||
Sbjct: 121 gctggtgaaccagtctacctg 141
>gnl|LJGI|AV421731 weakly similar to UniRef100_Q6K5E4 Cluster: RING-H2 zinc finger
protein ATL6-like; n=1; Oryza sativa Japonica Group|Rep:
RING-H2 zinc finger protein ATL6-like - Oryza sativa
subsp. japonica (Rice), partial (7%)
Length = 308
Score = 119 bits (60), Expect = 1e-26
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 101 gactcaagttcgacaagtccatggccattgtcttcgtgatcctggtagtcgtgttcttca 160
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 119 gactcaagttcgacaagtccatggccatcgtcctcgtgatcctggtagtcgtgttcttca 178
Query: 161 tgctgggc 168
||||||||
Sbjct: 179 tgctgggc 186
Score = 111 bits (56), Expect = 3e-24
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 34 ctcatcctcctcctcctcacgctccctccgccgccggccaccgcacagctaccaaacgtg 93
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28 ctcatcctcctcttcctcacgctccctccgccgccggccaccgcacagctaccaaacgtg 87
Score = 109 bits (55), Expect = 1e-23
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 174 cgcgttccccatcggcgccagcaacgggcgccaccgcggactcgacccggagatcatcga 233
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 246 cgcgttccccatcggcggcagcaactggcgccaccgcggactcgacccggagatcatcga 305
Query: 234 ttc 236
|||
Sbjct: 306 ttc 308