Miyakogusa Predicted Gene

Lj2g3v1198850.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1198850.1 Non Chatacterized Hit- tr|I1J687|I1J687_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45787
PE,83.33,0,Cpn60_TCP1,Chaperonin Cpn60/TCP-1; RUBISCO SUBUNIT
BINDING-PROTEIN BETA SUBUNIT, RUBB,NULL; CHAPERON,CUFF.36469.1
         (744 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80658 homologue to UniRef100_P08927 Cluster: RuBisCO ...    66   3e-10
gnl|LJGI|TC76045 homologue to UniRef100_P08927 Cluster: RuBisCO ...    66   3e-10

>gnl|LJGI|TC80658 homologue to UniRef100_P08927 Cluster: RuBisCO large
           subunit-binding protein subunit beta, chloroplast
           precursor; n=1; Pisum sativum|Rep: RuBisCO large
           subunit-binding protein subunit beta, chloroplast
           precursor - Pisum sativum (Garden pea), partial (31%)
          Length = 629

 Score = 65.9 bits (33), Expect = 3e-10
 Identities = 72/85 (84%)
 Strand = Plus / Plus

                                                                       
Query: 347 ttaaggctcctgcgttcggtgaacgcaagacccactacttagaagacattgccatcttga 406
           ||||||| |||| ||| || |||||||||| ||| ||| | || || |||||||| ||||
Sbjct: 438 ttaaggcccctgggtttggagaacgcaagagccagtaccttgatgatattgccattttga 497

                                    
Query: 407 ctggaggtactgtaatcagagaaga 431
           | ||||||||||| |||||||||||
Sbjct: 498 caggaggtactgtgatcagagaaga 522


>gnl|LJGI|TC76045 homologue to UniRef100_P08927 Cluster: RuBisCO large
           subunit-binding protein subunit beta, chloroplast
           precursor; n=1; Pisum sativum|Rep: RuBisCO large
           subunit-binding protein subunit beta, chloroplast
           precursor - Pisum sativum (Garden pea), partial (41%)
          Length = 743

 Score = 65.9 bits (33), Expect = 3e-10
 Identities = 72/85 (84%)
 Strand = Plus / Plus

                                                                       
Query: 347 ttaaggctcctgcgttcggtgaacgcaagacccactacttagaagacattgccatcttga 406
           ||||||| |||| ||| || |||||||||| ||| ||| | || || |||||||| ||||
Sbjct: 233 ttaaggcccctgggtttggagaacgcaagagccagtaccttgatgatattgccattttga 292

                                    
Query: 407 ctggaggtactgtaatcagagaaga 431
           | ||||||||||| |||||||||||
Sbjct: 293 caggaggtactgtgatcagagaaga 317