Miyakogusa Predicted Gene

Lj2g3v1193050.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1193050.1 Non Chatacterized Hit- tr|I1J6U3|I1J6U3_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,72.92,0,HLH,Helix-loop-helix domain; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; HLH, helix-loop-helix ,CUFF.36429.1
         (1338 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP039318 similar to UniRef100_A7Q759 Cluster: Chromosom...   424   e-118
gnl|LJGI|TC75292 similar to UniRef100_Q2HTN6 Cluster: Helix-loop...    62   9e-09

>gnl|LJGI|BP039318 similar to UniRef100_A7Q759 Cluster: Chromosome chr5 scaffold_58,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr5 scaffold_58, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (17%)
          Length = 528

 Score =  424 bits (214), Expect = e-118
 Identities = 214/214 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1125 aagaagaaggcctggacagttgatcaagatcattgctgcacttgaagatcttcagctcat 1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528  aagaagaaggcctggacagttgatcaagatcattgctgcacttgaagatcttcagctcat 469

                                                                        
Query: 1185 tatccttcacaccaacatcaccaccattgaacaaacagttctttattctttcaatgtcaa 1244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468  tatccttcacaccaacatcaccaccattgaacaaacagttctttattctttcaatgtcaa 409

                                                                        
Query: 1245 ggtggctggtgattcaaggttcactgctgaagacatagccagctccgttcagcaaatagt 1304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408  ggtggctggtgattcaaggttcactgctgaagacatagccagctccgttcagcaaatagt 349

                                              
Query: 1305 gagttttatccatgcaaacataagcatgtgatca 1338
            ||||||||||||||||||||||||||||||||||
Sbjct: 348  gagttttatccatgcaaacataagcatgtgatca 315


>gnl|LJGI|TC75292 similar to UniRef100_Q2HTN6 Cluster: Helix-loop-helix DNA-binding;
           n=1; Medicago truncatula|Rep: Helix-loop-helix
           DNA-binding - Medicago truncatula (Barrel medic),
           partial (24%)
          Length = 675

 Score = 61.9 bits (31), Expect = 9e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 778 tcatacgtccaaaggggtgatcaagcttctataat 812
           |||||| ||||||||||||||||||||||||||||
Sbjct: 616 tcatacatccaaaggggtgatcaagcttctataat 650