Miyakogusa Predicted Gene
- Lj2g3v1172610.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1172610.1 tr|F2CV11|F2CV11_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,33.96,0.000000000002,Sm-like ribonucleoproteins,Like-Sm (LSM)
domain; LSM14,Lsm14 N-terminal; seg,NULL; SCD6
PROTEIN-RELA,CUFF.36432.1
(1443 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57978 similar to UniRef100_A7P316 Cluster: Chromosome... 1528 0.0
gnl|LJGI|TC75329 similar to UniRef100_Q5ZFS5 Cluster: Nod factor... 1277 0.0
gnl|LJGI|FS321636 similar to UniRef100_A7P316 Cluster: Chromosom... 525 e-148
>gnl|LJGI|TC57978 similar to UniRef100_A7P316 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (39%)
Length = 914
Score = 1528 bits (771), Expect = 0.0
Identities = 771/771 (100%)
Strand = Plus / Plus
Query: 1 atgtcgtcgtcgcaagagagcgcttctcgttcaagctccgccgcggctgattcctacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 atgtcgtcgtcgcaagagagcgcttctcgttcaagctccgccgcggctgattcctacatt 203
Query: 61 ggttgcttgatcagcttgacctccaagagtgagatcagatacgaggggattctctacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggttgcttgatcagcttgacctccaagagtgagatcagatacgaggggattctctacaac 263
Query: 121 atcaacaccgatgaatccagtattggcctccgcaacgtgcgatcttttggaacagaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcaacaccgatgaatccagtattggcctccgcaacgtgcgatcttttggaacagaagga 323
Query: 181 aggaaaatggatggtcaacaaattcccccaagcgacaaggtttatgagtatatacttttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggaaaatggatggtcaacaaattcccccaagcgacaaggtttatgagtatatacttttc 383
Query: 241 cgtggatctgacatcaaggatttacaggttaaatcttctccacctgtccagcctactcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgtggatctgacatcaaggatttacaggttaaatcttctccacctgtccagcctactcca 443
Query: 301 caagtcaatattgacccagctatcattcagtctcactatcctcgcccagcgaccacatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caagtcaatattgacccagctatcattcagtctcactatcctcgcccagcgaccacatct 503
Query: 361 acaagtttgccttctgctgtaagtgggtctttgactgatctcagttcccatcatactgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acaagtttgccttctgctgtaagtgggtctttgactgatctcagttcccatcatactgca 563
Query: 421 cagcttggacttcctgggtcaaattttcaaggacccttgcctttgtatcaacctggaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagcttggacttcctgggtcaaattttcaaggacccttgcctttgtatcaacctggaggg 623
Query: 481 aacataggatcatggggagcttctccagctccaaatgcaagtggtggtgggcttcctatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacataggatcatggggagcttctccagctccaaatgcaagtggtggtgggcttcctatg 683
Query: 541 ccggtgtattggcaaggatattatggtgccccgggtggtcttcctcatttacaccagcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccggtgtattggcaaggatattatggtgccccgggtggtcttcctcatttacaccagcaa 743
Query: 601 cctttgcttcgaccaccacctggtttagcaatgcattcatctattcagcagcctatgcag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctttgcttcgaccaccacctggtttagcaatgcattcatctattcagcagcctatgcag 803
Query: 661 taccccaattttagtctctcttcaccggctgtatcttctaatttgccggaattgccatct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 taccccaattttagtctctcttcaccggctgtatcttctaatttgccggaattgccatct 863
Query: 721 tctttgctacctgcgagtacaagcacaaccagtgtaacatctgcttcttta 771
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tctttgctacctgcgagtacaagcacaaccagtgtaacatctgcttcttta 914
>gnl|LJGI|TC75329 similar to UniRef100_Q5ZFS5 Cluster: Nod factor-like protein; n=1;
Plantago major|Rep: Nod factor-like protein - Plantago
major (Common plantain), partial (70%)
Length = 1635
Score = 1277 bits (644), Expect = 0.0
Identities = 666/672 (99%), Gaps = 1/672 (0%)
Strand = Plus / Plus
Query: 762 tgcttctttacctctgttaaattttcctcctgcaccttctgcattgcctcctgcacctgc 821
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 47 tgcttctttacctctgttaaattttcctcccttaaat-ctgcattgcctcctgcacctgc 105
Query: 822 ggcattgtctcctgcaccttctgcattgcctcgcgcaccttctgcattgcctcctgcacc 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ggcattgtctcctgcaccttctgcattgcctcgcgcaccttctgcattgcctcctgcacc 165
Query: 882 ttctgctaccctagcttcagaaattttgccagttgcattagccaacaaggcaacaaatgt 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ttctgctaccctagcttcagaaattttgccagttgcattagccaacaaggcaacaaatgt 225
Query: 942 ttcaacttcagcagtttcgctagcttctaactttccatcactgaccccattgaccaattc 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ttcaacttcagcagtttcgctagcttctaactttccatcactgaccccattgaccaattc 285
Query: 1002 tggtccagatgtaaatgctatagtgccaccggtctccagcaaacctaatgcaatttcagg 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tggtccagatgtaaatgctatagtgccaccggtctccagcaaacctaatgcaatttcagg 345
Query: 1062 ctcaggtttgctatatcaaactgtatcacagttctctcctgctttaatgcccccggtctc 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctcaggtttgctatatcaaactgtatcacagttctctcctgctttaatgcccccggtctc 405
Query: 1122 cagcaaacctaatgtgatttctggttcaagcttgccataccaaactgtatcacagttctc 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cagcaaacctaatgtgatttctggttcaagcttgccataccaaactgtatcacagttctc 465
Query: 1182 ttctgctttaacaccaccagtctccagcaaacctaatgcaatttcaggttcaggtttgcc 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttctgctttaacaccaccagtctccagcaaacctaatgcaatttcaggttcaggtttgcc 525
Query: 1242 aaatcaaactgtgtcacagttctctcctgcagttgttggatcatctcattctatccatac 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaatcaaactgtgtcacagttctctcctgcagttgttggatcatctcattctatccatac 585
Query: 1302 agacacaccagcccctgctctggtaaccccaggtcaattattgcagcctggaccaactaa 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agacacaccagcccctgctctggtaaccccaggtcaattattgcagcctggaccaactaa 645
Query: 1362 agtttcgtatgctcagccttcacaggcacctaataaggatgttgaagtggttcaagtgtc 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agtttcgtatgctcagccttcacaggcacctaataaggatgttgaagtggttcaagtgtc 705
Query: 1422 ttcaacatcatc 1433
||||||||||||
Sbjct: 706 ttcaacatcatc 717
>gnl|LJGI|FS321636 similar to UniRef100_A7P316 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (40%)
Length = 866
Score = 525 bits (265), Expect = e-148
Identities = 512/593 (86%), Gaps = 6/593 (1%)
Strand = Plus / Plus
Query: 46 gctgattcctacattggttgcttgatcagcttgacctccaagagtgagatcagatacgag 105
||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 128 gctgattcctacattgggtgcttgatcagtttgacctcaaaaagtgagatcagatacgag 187
Query: 106 gggattctctacaacatcaacaccgatgaatccagtattggcctccgcaacgtgcgatct 165
|| ||||||||||| |||||||| | ||||| |||||||| ||| | || |||||||||
Sbjct: 188 ggtgttctctacaacgtcaacacccaagaatctagtattggtctcagaaatgtgcgatct 247
Query: 166 tttggaacagaaggaaggaaaatggatggtcaacaaattcccccaagcgacaaggtttat 225
|||||||| ||||||||||||| |||||||| ||||||||| ||| |||||||||| ||
Sbjct: 248 tttggaactgaaggaaggaaaaaggatggtccacaaattcctccaggcgacaaggtgtac 307
Query: 226 gagtatatacttttccgtggatctgacatcaaggatttacaggttaaatcttctccacct 285
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gagtatatactgttccgtgggactgacatcaaggatttacaggttaaatcttctccacct 367
Query: 286 gtccagcctactccacaagtcaatattgacccagctatcattcagtctcactatcctcgc 345
|||||||| ||| ||| | | ||| |||||||||||| ||||||||||| |||| |||
Sbjct: 368 gtccagcccactgcaccaataaatgctgacccagctattattcagtctcagtatcttcga 427
Query: 346 ccagcgaccacatctacaagtttgccttctgctgtaagtgggtctttgactgatctcagt 405
|| | ||||||||||||||||| | | |||| |||||| |||||||| ||||| |||
Sbjct: 428 cctgtcaccacatctacaagtttac---cagctgcaagtggatctttgacggatcttagt 484
Query: 406 tcccatcatactgcacagcttggacttcctgggtcaaattttcaaggacccttgcctttg 465
|||| | |||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct: 485 agttctcatgccacacagcttggacatcctgggtcaaattttcaaggccccttgccattg 544
Query: 466 tatcaacctggagggaacataggatcatggggagcttct---ccagctccaaatgcaagt 522
|||||||||||||||||||| || ||||||||||||||| || || |||||| ||| |
Sbjct: 545 tatcaacctggagggaacatggggtcatggggagcttcttcacccgccccaaatccaaat 604
Query: 523 ggtggtgggcttcctatgccggtgtattggcaaggatattatggtgccccgggtggtctt 582
|||||||||||| || |||| |||||| |||||||||||| ||||||||| ||| |||
Sbjct: 605 ggtggtgggcttgctgtgccaatgtatttgcaaggatattacggtgccccgaatgggctt 664
Query: 583 cctcatttacaccagcaacctttgcttcgaccaccacctggtttagcaatgca 635
||||| |||||||||||| |||||||||| ||||||||||| ||| |||||||
Sbjct: 665 cctcagttacaccagcaatctttgcttcggccaccacctggattatcaatgca 717