Miyakogusa Predicted Gene
- Lj2g3v1171110.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1171110.1 Non Chatacterized Hit- tr|A2ZP35|A2ZP35_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,81.82,0.000000004,B3,B3 DNA binding domain; AP2_ERF,AP2/ERF
domain; no description,AP2/ERF domain; no
description,DNA-,CUFF.36392.1
(1111 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67138 similar to UniRef100_Q45EZ4 Cluster: RAV-like D... 799 0.0
gnl|LJGI|TC80855 similar to UniRef100_A7P338 Cluster: Chromosome... 502 e-141
gnl|LJGI|AV412541 homologue to UniRef100_Q4G3H5 Cluster: RAV tra... 287 7e-77
gnl|LJGI|TC77735 similar to UniRef100_Q45EZ4 Cluster: RAV-like D... 202 3e-51
gnl|LJGI|CB828503 similar to UniRef100_A7QJ19 Cluster: Chromosom... 68 1e-10
gnl|LJGI|DC596118 similar to UniRef100_A7QJ19 Cluster: Chromosom... 62 8e-09
gnl|LJGI|TC76835 similar to UniRef100_Q45EZ4 Cluster: RAV-like D... 58 1e-07
>gnl|LJGI|TC67138 similar to UniRef100_Q45EZ4 Cluster: RAV-like DNA-binding protein;
n=1; Glycine max|Rep: RAV-like DNA-binding protein -
Glycine max (Soybean), partial (29%)
Length = 703
Score = 799 bits (403), Expect = 0.0
Identities = 403/403 (100%)
Strand = Plus / Plus
Query: 709 tttaggtactcgtattggaatagtagccagagctacgtgcttaccaaagggtggagccgg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttaggtactcgtattggaatagtagccagagctacgtgcttaccaaagggtggagccgg 60
Query: 769 ttcgttaaggagaagtgcctcaaagccggtgactcggtttgcttccatcggtcaaccggg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcgttaaggagaagtgcctcaaagccggtgactcggtttgcttccatcggtcaaccggg 120
Query: 829 ccagacagacagctcttcattgattttaaggtcaggaggaccaatgccaatgaaacagct 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccagacagacagctcttcattgattttaaggtcaggaggaccaatgccaatgaaacagct 180
Query: 889 gtgctgttcggctcggtcggacctgtagttgagccggtccaaatggttcggctcttcggg 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgctgttcggctcggtcggacctgtagttgagccggtccaaatggttcggctcttcggg 240
Query: 949 gttaacattttgaaactgcccggatcagatgctaatgctaataacaataataatcacaat 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttaacattttgaaactgcccggatcagatgctaatgctaataacaataataatcacaat 300
Query: 1009 gctgctgctcctatggctgggtgctgcaatggcaagaggaaagaaatggaactgttcacc 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gctgctgctcctatggctgggtgctgcaatggcaagaggaaagaaatggaactgttcacc 360
Query: 1069 tttgaatgtatcaagaagcctaagatcattggagctttgtaac 1111
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttgaatgtatcaagaagcctaagatcattggagctttgtaac 403
>gnl|LJGI|TC80855 similar to UniRef100_A7P338 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 421
Score = 502 bits (253), Expect = e-141
Identities = 253/253 (100%)
Strand = Plus / Plus
Query: 72 aaacagcctctgccgtgtcggcagcggggcaagcgcggttgtggatcctgaaggatccgc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aaacagcctctgccgtgtcggcagcggggcaagcgcggttgtggatcctgaaggatccgc 228
Query: 132 cggcgccggagaagctgaatcccggaagctcccgtcgtcgaaatacaaaggcgttgtgcc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cggcgccggagaagctgaatcccggaagctcccgtcgtcgaaatacaaaggcgttgtgcc 288
Query: 192 gcagcccaacgggcgctggggagcgcagatttacgagaagcaccagcgcgtgtggctggg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gcagcccaacgggcgctggggagcgcagatttacgagaagcaccagcgcgtgtggctggg 348
Query: 252 gacattcaacgaggaggacgaggccgccagggcctacgacgtcgccgcgcaaaggttccg 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gacattcaacgaggaggacgaggccgccagggcctacgacgtcgccgcgcaaaggttccg 408
Query: 312 cggcaaggacgcc 324
|||||||||||||
Sbjct: 409 cggcaaggacgcc 421
Score = 105 bits (53), Expect = 6e-22
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 1 atggatggatcaggcagttgcatagacgaaagcaccaccaccgaatcactctc 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atggatggatcaggcagttgcatagacgaaagcaccaccaccgaatcactctc 123
>gnl|LJGI|AV412541 homologue to UniRef100_Q4G3H5 Cluster: RAV transcription factor;
n=1; Capsicum annuum|Rep: RAV transcription factor -
Capsicum annuum (Bell pepper), partial (16%)
Length = 304
Score = 287 bits (145), Expect = 7e-77
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 535 aaggcgcgtgagcctctgtttgagaaggcagttaccccgagcgatgtagggaagctgaac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aaggcgcgtgagcctctgtttgagaaggcagttaccccgagcgatgtagggaagctgaac 219
Query: 595 cgtttggtgataccgaagcagcatgcggagaagcactttccgttacagagcgtgggcgtg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 cgtttggtgataccgaagcagcatgcggagaagcactttccgttacagagcgtgggcgtg 279
Query: 655 gccgggggcgtggcgggaaacgtgt 679
|||||||||||||||||||||||||
Sbjct: 280 gccgggggcgtggcgggaaacgtgt 304
Score = 244 bits (123), Expect = 1e-63
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 400 tttcttaactcgcactcgaaatctgagatcgtcgacatgctgagaaagcatacttacaat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcttaactcgcactcgaaatctgagatcgtcgacatgctgagaaagcatacttacaat 60
Query: 460 gacgagctggagcagagcaagcgcagccgcggactcgtgggccggaaacgcgccgccggg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacgagctggagcagagcaagcgcagccgcggactcgtgggccggaaacgcgccgccggg 120
Query: 520 gaa 522
|||
Sbjct: 121 gaa 123
>gnl|LJGI|TC77735 similar to UniRef100_Q45EZ4 Cluster: RAV-like DNA-binding protein;
n=1; Glycine max|Rep: RAV-like DNA-binding protein -
Glycine max (Soybean), partial (32%)
Length = 652
Score = 202 bits (102), Expect = 3e-51
Identities = 183/210 (87%)
Strand = Plus / Plus
Query: 132 cggcgccggagaagctgaatcccggaagctcccgtcgtcgaaatacaaaggcgttgtgcc 191
|||| |||| || ||||| ||||||||||| ||| |||| |||||||||||||| |||||
Sbjct: 327 cggccccggggaggctgagtcccggaagcttccgccgtcaaaatacaaaggcgtggtgcc 386
Query: 192 gcagcccaacgggcgctggggagcgcagatttacgagaagcaccagcgcgtgtggctggg 251
||| |||||||| || ||||| || || |||||| |||||||||||||||||||||| ||
Sbjct: 387 gcaacccaacggccggtggggcgctcaaatttacaagaagcaccagcgcgtgtggctcgg 446
Query: 252 gacattcaacgaggaggacgaggccgccagggcctacgacgtcgccgcgcaaaggttccg 311
|| ||||||||||| |||||||||||||| ||||||||| ||||||| ||||| |||||
Sbjct: 447 aaccttcaacgaggaagacgaggccgccagagcctacgacatcgccgctcaaagattccg 506
Query: 312 cggcaaggacgccgtgactaattttaagcc 341
|||||||||||| || ||||| || |||||
Sbjct: 507 cggcaaggacgctgtaactaacttcaagcc 536
>gnl|LJGI|CB828503 similar to UniRef100_A7QJ19 Cluster: Chromosome chr2 scaffold_105,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_105, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (22%)
Length = 487
Score = 67.9 bits (34), Expect = 1e-10
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 574 agcgatgtagggaagctgaaccgtttggtgataccgaagcagcatgcggagaagcacttt 633
|||||||| |||||||||||| | ||||||| || |||||||||||||||||| |||||
Sbjct: 193 agcgatgtggggaagctgaacaggctggtgatcccaaagcagcatgcggagaagtacttt 134
Query: 634 cc 635
||
Sbjct: 133 cc 132
>gnl|LJGI|DC596118 similar to UniRef100_A7QJ19 Cluster: Chromosome chr2 scaffold_105,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_105, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 567
Score = 61.9 bits (31), Expect = 8e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 713 ggtactcgtattggaatagtagccagagctacgtgcttaccaaagggtggagccggttcg 772
|||||||||| ||||| || ||||||||||| ||| | || ||||| ||||||||||| |
Sbjct: 41 ggtactcgtactggaacagcagccagagctatgtgatgacaaaaggatggagccggtttg 100
Query: 773 ttaaggagaag 783
| |||||||||
Sbjct: 101 tgaaggagaag 111
>gnl|LJGI|TC76835 similar to UniRef100_Q45EZ4 Cluster: RAV-like DNA-binding protein;
n=1; Glycine max|Rep: RAV-like DNA-binding protein -
Glycine max (Soybean), partial (35%)
Length = 735
Score = 58.0 bits (29), Expect = 1e-07
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 715 tactcgtattggaatagtagccagagctacgtgcttaccaaagggtggagccggttcgtt 774
||||| |||||||| |||||||||||||| || | |||||||| ||||| ||||| ||
Sbjct: 97 tactcttattggaacagtagccagagctatgttttgaccaaaggatggagtcggtttgtg 156
Query: 775 aaggagaag 783
|||||||||
Sbjct: 157 aaggagaag 165