Miyakogusa Predicted Gene
- Lj2g3v1106410.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1106410.1 tr|A8NG41|A8NG41_COPC7 Transcription/repair
factor TFIIH subunit Tfb3 OS=Coprinopsis cinerea
(strain,59.49,6e-17,seg,NULL; MAT1,Cdk-activating kinase assembly
factor MAT1, centre; TRANSCRIPTION/REPAIR FACTOR TFIIH,CUFF.36273.1
(561 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76999 similar to UniRef100_A7PFL3 Cluster: Chromosome... 605 e-172
gnl|LJGI|DC598086 weakly similar to UniRef100_Q9LQA0 Cluster: F4... 129 2e-29
gnl|LJGI|BP063753 similar to UniRef100_A7PFL3 Cluster: Chromosom... 88 7e-17
gnl|LJGI|TC67044 similar to UniRef100_Q6QGZ4 Cluster: Tubulin be... 88 7e-17
gnl|LJGI|GO018318 74 1e-12
gnl|LJGI|TC77971 UniRef100_A0L6F3 Cluster: UreE urease accessory... 74 1e-12
gnl|LJGI|TC69824 74 1e-12
gnl|LJGI|TC76336 72 4e-12
>gnl|LJGI|TC76999 similar to UniRef100_A7PFL3 Cluster: Chromosome chr11 scaffold_14,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_14, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (43%)
Length = 560
Score = 605 bits (305), Expect = e-172
Identities = 341/353 (96%)
Strand = Plus / Plus
Query: 209 attcagaacaaataatggttaatcgagcccgtaaggctgaagaattagctgcagctttgg 268
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 1 attcagaacaaataatggttaatcgtgctcgtaaggctgaagaattagctgcagctttgg 60
Query: 269 cagcaagtaagggacaagctgcccaaactgctaatgatgtgggtgcaagccaagactttg 328
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct: 61 cagcaagtaagggacaagctgccccaactgctaatgatgtgggtgcgagcccagactttg 120
Query: 329 gtgctgttcctcagggacaatatgcacctacatttgcaggacagcctagaccaaccggca 388
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 121 gtgctgttcctcagggaccatatgcacctacatttgcaggaccgcctagacccaccggca 180
Query: 389 tggctccacagcctttaccactcggagggagtgacatgccgggctatgcaggtgatgacg 448
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggctccccagcctttacccctcggagggagtgacatgccgggctatgcaggtgatgacg 240
Query: 449 atgaaacgatgaggctacgagcggagagaggagcaagggctggaggatggagtctagaaa 508
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 241 atgaaacgatgaggctacgagcggagagaggagccagggctggaggatggagtctagaaa 300
Query: 509 taagcaggaagagggcacttgaagaagcttttggaagcatgtgggtttgttga 561
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taagccggaagagggcacttgaagaagcttttggaagcatgtgggtttgttga 353
>gnl|LJGI|DC598086 weakly similar to UniRef100_Q9LQA0 Cluster: F4N2.19; n=1;
Arabidopsis thaliana|Rep: F4N2.19 - Arabidopsis thaliana
(Mouse-ear cress), partial (11%)
Length = 550
Score = 129 bits (65), Expect = 2e-29
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 atggtaatctccagtaccaatccccacaataaggagatagccatcaggaggaggattgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atggtaatctccagtaccaatccccacaataaggagatagccatcaggaggaggattgct 453
Query: 61 agcat 65
|||||
Sbjct: 454 agcat 458
>gnl|LJGI|BP063753 similar to UniRef100_A7PFL3 Cluster: Chromosome chr11 scaffold_14,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_14, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 476
Score = 87.7 bits (44), Expect = 7e-17
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 242 aggctgaagaattagctgcagctttggcagcaagtaagggacaagctgcccaaactgcta 301
|||||||||||||| ||||| |||||||||||||||||||||| |||| ||||||| ||
Sbjct: 383 aggctgaagaattacctgcaattttggcagcaagtaagggacaacctgctcaaactgata 324
Query: 302 atgatgtg 309
||||||||
Sbjct: 323 atgatgtg 316
>gnl|LJGI|TC67044 similar to UniRef100_Q6QGZ4 Cluster: Tubulin beta chain; n=1;
Ophiostoma minus|Rep: Tubulin beta chain - Ophiostoma
minus, partial (6%)
Length = 816
Score = 87.7 bits (44), Expect = 7e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 242 aggctgaagaattagctgcagctttggcagcaagtaagggacaagctgcccaaactgcta 301
|||||||||||||| ||||| ||||||||||||||||||||||| || | ||||||| ||
Sbjct: 38 aggctgaagaattacctgcaactttggcagcaagtaagggacaaccttctcaaactgata 97
Query: 302 atgatgtg 309
||||||||
Sbjct: 98 atgatgtg 105
>gnl|LJGI|GO018318
Length = 585
Score = 73.8 bits (37), Expect = 1e-12
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 242 aggctgaagaattagctgcagctttggcagcaagtaagggacaagctgcccaaactgcta 301
||||||||||| || ||||| ||||||||||||||| ||||||| |||| ||||||| ||
Sbjct: 367 aggctgaagaactacctgcaactttggcagcaagtatgggacaacctgctcaaactgata 426
Query: 302 atgat 306
|||||
Sbjct: 427 atgat 431
>gnl|LJGI|TC77971 UniRef100_A0L6F3 Cluster: UreE urease accessory domain protein;
n=1; Magnetococcus sp. MC-1|Rep: UreE urease accessory
domain protein - Magnetococcus sp. (strain MC-1),
partial (5%)
Length = 1188
Score = 73.8 bits (37), Expect = 1e-12
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 242 aggctgaagaattagctgcagctttggcagcaagtaagggacaagctgcccaaactgcta 301
||||||||||| || ||||| ||||||||||||||| ||||||| |||| ||||||| ||
Sbjct: 505 aggctgaagaactacctgcaactttggcagcaagtatgggacaacctgctcaaactgata 564
Query: 302 atgat 306
|||||
Sbjct: 565 atgat 569
>gnl|LJGI|TC69824
Length = 1092
Score = 73.8 bits (37), Expect = 1e-12
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 242 aggctgaagaattagctgcagctttggcagcaagtaagggacaag 286
|||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 361 aggctgaagaattacctgcaactttggcagcaagtaagggacaag 405
>gnl|LJGI|TC76336
Length = 1035
Score = 71.9 bits (36), Expect = 4e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 242 aggctgaagaattagctgcagctttggcagcaagtaagggacaagctgcccaaactgcta 301
|||||||| ||||| ||||| ||||||||||||||||||| || |||| ||||||| ||
Sbjct: 160 aggctgaataattacctgcaattttggcagcaagtaagggagaacctgctcaaactgata 219
Query: 302 atgatgtg 309
||||||||
Sbjct: 220 atgatgtg 227