Miyakogusa Predicted Gene

Lj2g3v1080750.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1080750.1 tr|G7IP47|G7IP47_MEDTR DNA-directed RNA
polymerase subunit beta OS=Medicago truncatula
GN=MTR_2g0189,62.82,4e-19,N7-RELATED PROTEIN,NULL; F-BOX/LEUCINE RICH
REPEAT PROTEIN,NULL; RNI-like,NULL; no description,NULL,CUFF.36211.1
         (612 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80874 weakly similar to UniRef100_O82023 Cluster: N7 ...   133   1e-30
gnl|LJGI|TC63939 similar to UniRef100_Q2HSK3 Cluster: Cyclin-lik...    56   3e-07
gnl|LJGI|TC82289 weakly similar to UniRef100_Q2HSK3 Cluster: Cyc...    54   1e-06

>gnl|LJGI|TC80874 weakly similar to UniRef100_O82023 Cluster: N7 protein; n=1;
           Medicago truncatula|Rep: N7 protein - Medicago
           truncatula (Barrel medic), partial (34%)
          Length = 1017

 Score =  133 bits (67), Expect = 1e-30
 Identities = 376/477 (78%), Gaps = 9/477 (1%)
 Strand = Plus / Plus

                                                                       
Query: 56  tgctgaagctttgtcgctatgcgattgaacaaagttgcggtcatttggaagatatcagta 115
           |||| ||| |||||| | |||| ||||||| ||| || |||  ||||||||| || ||||
Sbjct: 337 tgctcaagttttgtctccatgccattgaacgaagctgtggttctttggaagacattagta 396

                                                                       
Query: 116 ttgatttcttttgcactgatgaagtcctcaaatacattgctgatagcggaagccacctac 175
           ||||    ||||||||||||||| ||||| ||| |||||||||||||||||| |||||||
Sbjct: 397 ttgaggatttttgcactgatgaaatcctccaatccattgctgatagcggaagtcacctac 456

                                                                       
Query: 176 gaaggatggggcttttgatgaaatcctggggaatttcagatgtaggaatgattgagcttg 235
           || | ||| |||||||||   | | |||||  ||||| |||| |  | ||| ||||  ||
Sbjct: 457 gacgaatgcggcttttga---actgctgggagatttctgatgaacaattgagtgagactg 513

                                                                       
Query: 236 taaagaagcttccgctgttggaagagtttgagatttcattcaattgtctacctaagaata 295
           | ||||||||||| |||||||| |||||||| ||||||||||     ||| ||||| | |
Sbjct: 514 tgaagaagcttccactgttggaggagtttgaaatttcattcagccccctatctaaggaca 573

                                                                       
Query: 296 ttttggaacttattggtcaatcttgcccatttttgaaagtgattaaatttacactattta 355
            ||||||||| || ||  ||| |||||||  |||||||||| | ||||||| ||     |
Sbjct: 574 ctttggaactcatgggcaaatgttgcccacatttgaaagtgctgaaattta-ac-----a 627

                                                                       
Query: 356 ttgggtttcctaaaggctttgagtgtaatgatgatgcgttcgttatcgcaaaaactatgc 415
           |  ||   |  ||||||||||| ||| ||||||| || || | ||| |||||||| ||||
Sbjct: 628 tgaggggactgaaaggctttgaatgtgatgatgaggcatttgctattgcaaaaaccatgc 687

                                                                       
Query: 416 ctgagctacgtcatcttcaacttattgcgaataggctcactaatgatggcttgcttgcca 475
           || ||||  |||||||||| ||| | |  || |||||||||||| | |||||| |||| |
Sbjct: 688 ctcagctgtgtcatcttcagcttttgggaaacaggctcactaataacggcttgattgcta 747

                                                                    
Query: 476 ttcttgacggatgtcgtcatcttgaatctcttgatctgcgtggttgttccaatgttg 532
           ||||||| || || | |||||||||||||||||| ||||||| |||||| |||||||
Sbjct: 748 ttcttgatgggtgccctcatcttgaatctcttgacctgcgtgcttgttctaatgttg 804


>gnl|LJGI|TC63939 similar to UniRef100_Q2HSK3 Cluster: Cyclin-like F-box; n=1;
           Medicago truncatula|Rep: Cyclin-like F-box - Medicago
           truncatula (Barrel medic), partial (37%)
          Length = 840

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 127/160 (79%)
 Strand = Plus / Plus

                                                                       
Query: 391 gcgttcgttatcgcaaaaactatgcctgagctacgtcatcttcaacttattgcgaatagg 450
           ||||| ||||| ||| |||| ||||||||||| ||||| || ||  |||| |  || || 
Sbjct: 324 gcgtttgttatagcagaaacaatgcctgagctgcgtcacctacagattatgggaaacagt 383

                                                                       
Query: 451 ctcactaatgatggcttgcttgccattcttgacggatgtcgtcatcttgaatctcttgat 510
           |||| |||||||||||||||||| |||||||| || || | || ||| |||| |||||| 
Sbjct: 384 ctcagtaatgatggcttgcttgctattcttgatggttgccctcttctcgaatatcttgac 443

                                                   
Query: 511 ctgcgtggttgttccaatgttgatttgagcgggagtttgg 550
           || |  |||||| |   |||||||||||| || |||||||
Sbjct: 444 ctacaaggttgtccttttgttgatttgagtggtagtttgg 483


>gnl|LJGI|TC82289 weakly similar to UniRef100_Q2HSK3 Cluster: Cyclin-like F-box; n=1;
            Medicago truncatula|Rep: Cyclin-like F-box - Medicago
            truncatula (Barrel medic), partial (50%)
          Length = 1365

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 60   gaagctttgtcgctatgcgattgaacaaagttgcggtcatttggaagatatcagtattg 118
            |||| ||||||||||||| ||||| | ||| ||||||||| ||||||| || |||||||
Sbjct: 997  gaagatttgtcgctatgccattgatcgaagctgcggtcatctggaagacattagtattg 1055