Miyakogusa Predicted Gene

Lj2g3v1079660.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1079660.1 Non Chatacterized Hit- tr|D8TCD1|D8TCD1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,56.25,3e-18,DUF3571,Protein of unknown function
DUF3571,CUFF.36217.1
         (456 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC63480 similar to UniRef100_A7PAA3 Cluster: Chromosome...   904   0.0  
gnl|LJGI|GO023103 UniRef100_Q4W0H4 Cluster: Reverse transcriptas...   109   2e-23

>gnl|LJGI|TC63480 similar to UniRef100_A7PAA3 Cluster: Chromosome chr14 scaffold_9,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_9, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (56%)
          Length = 814

 Score =  904 bits (456), Expect = 0.0
 Identities = 456/456 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttggagttttgcaggctcaggccttcaatgttggagctcggtacttcccttatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  atggttggagttttgcaggctcaggccttcaatgttggagctcggtacttcccttatgca 114

                                                                       
Query: 61  gaaagttaccctattcagagtcctgtaatgcatgtaacctcaccaggcctagttaaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gaaagttaccctattcagagtcctgtaatgcatgtaacctcaccaggcctagttaaatgt 174

                                                                       
Query: 121 ttcagttctttaatccgtcagagactgcctcaaattgcaggtgttagcaaaagtaataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ttcagttctttaatccgtcagagactgcctcaaattgcaggtgttagcaaaagtaataca 234

                                                                       
Query: 181 aagctttttgcattgaggcggagaagggcaaatgagagaactgaaacttatgtactacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aagctttttgcattgaggcggagaagggcaaatgagagaactgaaacttatgtactacta 294

                                                                       
Query: 241 gaaccaggggaggatgagaagtttgtttctgaggaagagttgaaggccacattgaaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gaaccaggggaggatgagaagtttgtttctgaggaagagttgaaggccacattgaaagag 354

                                                                       
Query: 301 cggctgacaaattggcctggaaaggctcttcctcctgatcttgcaagatatgagaccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cggctgacaaattggcctggaaaggctcttcctcctgatcttgcaagatatgagaccatt 414

                                                                       
Query: 361 gatgaagctgtttctttcctagtgaggtccgtttgtgaacttgaaattgatggagatgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gatgaagctgtttctttcctagtgaggtccgtttgtgaacttgaaattgatggagatgtt 474

                                               
Query: 421 ggctcagtccaatggtatgaggtccgtttagagtga 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggctcagtccaatggtatgaggtccgtttagagtga 510


>gnl|LJGI|GO023103 UniRef100_Q4W0H4 Cluster: Reverse transcriptase-RNaseH; n=4;
          Banana streak Uganda M virus|Rep: Reverse
          transcriptase-RNaseH - Banana streak Uganda M virus,
          partial (6%)
          Length = 562

 Score =  109 bits (55), Expect = 2e-23
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1  atggttggagttttgcaggctcaggccttcaatgttggagctcggtacttccctt 55
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 atggttggagttttgcaggctcaggccttcaatgttggagctcggtacttccctt 89