Miyakogusa Predicted Gene
- Lj2g3v1069200.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1069200.3 Non Chatacterized Hit- tr|H9GCF3|H9GCF3_ANOCA
Uncharacterized protein OS=Anolis carolinensis
GN=UBE4,54.55,2e-19,Modified RING finger domain,U box domain; U-box,U
box domain; UBIQUITINATION FACTOR E4B/UFD2(YEAST),,CUFF.36534.3
(834 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58656 homologue to UniRef100_A7PN20 Cluster: Chromoso... 1622 0.0
gnl|LJGI|TC77951 similar to UniRef100_Q9LF41 Cluster: Ubiquitin-... 1614 0.0
gnl|LJGI|FS318742 similar to UniRef100_Q9LF41 Cluster: Ubiquitin... 1411 0.0
gnl|LJGI|BP052636 similar to UniRef100_Q9LF41 Cluster: Ubiquitin... 426 e-119
gnl|LJGI|AV778557 weakly similar to UniRef100_Q9LF41 Cluster: Ub... 226 2e-58
gnl|LJGI|BP065454 168 3e-41
>gnl|LJGI|TC58656 homologue to UniRef100_A7PN20 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (38%)
Length = 1476
Score = 1622 bits (818), Expect = 0.0
Identities = 830/834 (99%)
Strand = Plus / Plus
Query: 1 atgtcaaatacagctgagtgggaaagacggccagttcaggagaggcaggagaggacccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atgtcaaatacagctgagtgggaaagacggccagttcaggagaggcaggagaggacccgg 505
Query: 61 ttattccattctcaagaaattattattcgaatagatatgaagttggcaaatgaagaagtt 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 506 ttattccattctcaagaaaatattattcgaatagatatgaagttggcaaatgaagatgtt 565
Query: 121 agtatgcttgcatttacttcagaacagattactgttccattcctacttcctgagatggtg 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 566 agtatgcttgcatttacttcagaacagattactgttccattcctacttccagagatggtg 625
Query: 181 gaaagagtggctagtatgctgaattactttctgctgcaattggtgggtccccaaagaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaaagagtggctagtatgctgaattactttctgctgcaattggtgggtccccaaagaaaa 685
Query: 241 tcgcttagtctgaaagatcctgagaaatatgaattccgtccaaaggatttgctaaaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcgcttagtctgaaagatcctgagaaatatgaattccgtccaaaggatttgctaaaacag 745
Query: 301 attgtgcacatatatattcacctggctagaggtgacacaaatgctatcttcccagctgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 attgtgcacatatatattcacctggctagaggtgacacaaatgctatcttcccagctgca 805
Query: 361 atctccaaagatggtagatcatacaatgaccagttgtttagtgctggtgcagatgtccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 atctccaaagatggtagatcatacaatgaccagttgtttagtgctggtgcagatgtccta 865
Query: 421 cgtagaattggtgaggatccgaaagttatacaggagtttattcaactaggtgctaaagca 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 866 cgtagaattggtgaggatccgaaagtcatacaggagtttattcaactaggtgctaaagca 925
Query: 481 aaagttgctgcttcagaagccatggatgccgaagctactctgggagaaataccagatgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 aaagttgctgcttcagaagccatggatgccgaagctactctgggagaaataccagatgaa 985
Query: 541 ttccttgatccgattcaatacactttgatgaaggatccagttatcttgccttcttcaagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ttccttgatccgattcaatacactttgatgaaggatccagttatcttgccttcttcaagg 1045
Query: 601 atcacggttgatcgtcctgtcattcagagacatcttcttagtgatgcttctgacccattc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 atcacggttgatcgtcctgtcattcagagacatcttcttagtgatgcttctgacccattc 1105
Query: 661 aaccgttctcatcttactgcggatatgctgattcctgatgttgaactaaaagcacgaatt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 aaccgttctcatcttactgcggatatgctgattcctgatgttgaactaaaagcacgaatt 1165
Query: 721 gaggagtttgtcaggtctcaggaaatgaagaaacacggtgaagggctaagcatacagagt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 gaggagtttgtcaggtctcaggaaatgaagaaacacggtgaagggctaagcatacagagt 1225
Query: 781 agtagcaaggccaccattcagaccacaaatggggaaaaaatgttgattgattag 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 agtagcaaggccaccattcagaccacaaatggggaaaaaatgttgattgattag 1279
>gnl|LJGI|TC77951 similar to UniRef100_Q9LF41 Cluster: Ubiquitin-fusion degradation
protein-like; n=1; Arabidopsis thaliana|Rep:
Ubiquitin-fusion degradation protein-like - Arabidopsis
thaliana (Mouse-ear cress), partial (33%)
Length = 1302
Score = 1614 bits (814), Expect = 0.0
Identities = 829/834 (99%)
Strand = Plus / Plus
Query: 1 atgtcaaatacagctgagtgggaaagacggccagttcaggagaggcaggagaggacccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgtcaaatacagctgagtgggaaagacggccagttcaggagaggcaggagaggacccgg 300
Query: 61 ttattccattctcaagaaattattattcgaatagatatgaagttggcaaatgaagaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttattccattctcaagaaattattattcgaatagatatgaagttggcaaatgaagaagtt 360
Query: 121 agtatgcttgcatttacttcagaacagattactgttccattcctacttcctgagatggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtatgcttgcatttacttcagaacagattactgttccattcctacttcctgagatggtg 420
Query: 181 gaaagagtggctagtatgctgaattactttctgctgcaattggtgggtccccaaagaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaaagagtggctagtatgctgaattactttctgctgcaattggtgggtccccaaagaaaa 480
Query: 241 tcgcttagtctgaaagatcctgagaaatatgaattccgtccaaaggatttgctaaaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcgcttagtctgaaagatcctgagaaatatgaattccgtccaaaggatttgctaaaacag 540
Query: 301 attgtgcacatatatattcacctggctagaggtgacacaaatgctatcttcccagctgca 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 attgtgcacatatatattcacctggccagaggtgacacaaatgctatcttcccagctgca 600
Query: 361 atctccaaagatggtagatcatacaatgaccagttgtttagtgctggtgcagatgtccta 420
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atctcaaaagatggaagatcatacaatgaccagttgtttagtgctggtgcagatgtccta 660
Query: 421 cgtagaattggtgaggatccgaaagttatacaggagtttattcaactaggtgctaaagca 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 661 cgtagaattggtgaggatccgaaagtcatacaggagtttattcaactaggtgctaaagca 720
Query: 481 aaagttgctgcttcagaagccatggatgccgaagctactctgggagaaataccagatgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aaagttgctgcttcagaagccatggatgccgaagctactctgggagaaataccagatgaa 780
Query: 541 ttccttgatccgattcaatacactttgatgaaggatccagttatcttgccttcttcaagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttccttgatccgattcaatacactttgatgaaggatccagttatcttgccttcttcaagg 840
Query: 601 atcacggttgatcgtcctgtcattcagagacatcttcttagtgatgcttctgacccattc 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 841 atcacggttgatcgtcctgtcattcagagacatcttcttagtgatgcttttgacccattc 900
Query: 661 aaccgttctcatcttactgcggatatgctgattcctgatgttgaactaaaagcacgaatt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aaccgttctcatcttactgcggatatgctgattcctgatgttgaactaaaagcacgaatt 960
Query: 721 gaggagtttgtcaggtctcaggaaatgaagaaacacggtgaagggctaagcatacagagt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gaggagtttgtcaggtctcaggaaatgaagaaacacggtgaagggctaagcatacagagt 1020
Query: 781 agtagcaaggccaccattcagaccacaaatggggaaaaaatgttgattgattag 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 agtagcaaggccaccattcagaccacaaatggggaaaaaatgttgattgattag 1074
>gnl|LJGI|FS318742 similar to UniRef100_Q9LF41 Cluster: Ubiquitin-fusion degradation
protein-like; n=1; Arabidopsis thaliana|Rep:
Ubiquitin-fusion degradation protein-like - Arabidopsis
thaliana (Mouse-ear cress), partial (22%)
Length = 878
Score = 1411 bits (712), Expect = 0.0
Identities = 742/753 (98%), Gaps = 8/753 (1%)
Strand = Plus / Plus
Query: 82 attattcgaatagatatgaagttggcaaatgaagaagttagtatgcttgcatttacttca 141
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 attattcgaatagatatgaagttggcaaatgaagatgtcagtatgcttgcatttacttca 60
Query: 142 gaacagattactgttccattcctacttcctgagatggtggaaagagtggctagtatgctg 201
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 gaacagattactgttccattcctacttccagagatggtggaaagagtggctagtatgctg 120
Query: 202 aattactttctgctgcaattggtgggtccccaaagaaaatcgcttagtctgaaagatcct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattactttctgctgcaattggtgggtccccaaagaaaatcgcttagtctgaaagatcct 180
Query: 262 gagaaatatgaattccgtccaaaggatttgctaaaacagattgtgcacatatatattcac 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagaaatatgaattccgtccaaaggatttgctaaaacagattgtgcacatatatattcac 240
Query: 322 ctggctagaggtgacacaaatgctatcttcccagctgcaatctccaaagatggtagatca 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctggctagaggtgacacaaatgctatcttcccagctgcaatctccaaagatggtagatca 300
Query: 382 tacaatgaccagttgtttagtgctggtgcagatgtcctacgtagaattggtgaggatccg 441
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tacaatgaccagt--------gctggtgcagatgtcctacgtagaattggtgaggatccg 352
Query: 442 aaagttatacaggagtttattcaactaggtgctaaagcaaaagttgctgcttcagaagcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaagttatacaggagtttattcaactaggtgctaaagcaaaagttgctgcttcagaagcc 412
Query: 502 atggatgccgaagctactctgggagaaataccagatgaattccttgatccgattcaatac 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atggatgccgaagctactctgggagaaataccagatgaattccttgatccgattcaatac 472
Query: 562 actttgatgaaggatccagttatcttgccttcttcaaggatcacggttgatcgtcctgtc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 actttgatgaaggatccagttatcttgccttcttcaaggatcacggttgatcgtcctgtc 532
Query: 622 attcagagacatcttcttagtgatgcttctgacccattcaaccgttctcatcttactgcg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 attcagagacatcttcttagtgatgcttctgacccattcaaccgttctcatcttactgcg 592
Query: 682 gatatgctgattcctgatgttgaactaaaagcacgaattgaggagtttgtcaggtctcag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gatatgctgattcctgatgttgaactaaaagcacgaattgaggagtttgtcaggtctcag 652
Query: 742 gaaatgaagaaacacggtgaagggctaagcatacagagtagtagcaaggccaccattcag 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaaatgaagaaacacggtgaagggctaagcatacagagtagtagcaaggccaccattcag 712
Query: 802 accacaaatggggaaaaaatgttgattgattag 834
|||||||||||||||||||||||||||||||||
Sbjct: 713 accacaaatggggaaaaaatgttgattgattag 745
>gnl|LJGI|BP052636 similar to UniRef100_Q9LF41 Cluster: Ubiquitin-fusion degradation
protein-like; n=1; Arabidopsis thaliana|Rep:
Ubiquitin-fusion degradation protein-like - Arabidopsis
thaliana (Mouse-ear cress), partial (7%)
Length = 484
Score = 426 bits (215), Expect = e-119
Identities = 276/295 (93%), Gaps = 1/295 (0%)
Strand = Plus / Minus
Query: 541 ttccttgatccgattcaatacactttgatgaaggatccagttatcttgccttcttcaagg 600
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 484 ttccttgatccgattcaatacactttgatgaaggatccagtactcttgccttcttcaagg 425
Query: 601 atcacggttgatcgtcctgtcattcagagacatcttcttagtgatgcttctgacccattc 660
||| || ||||||| |||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 424 atcccgattgatcggcctgtcattcagagacatcttcgtagtgatgcttcggacccattc 365
Query: 661 aaccgttctcatcttactgcggatatgctgattcctgatgttgaactaaaagcacgaatt 720
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 364 aaccgttctcatcttactgcggatatgctgattcctgatcttgaactaaaagcacgaatt 305
Query: 721 gaggagtttgtcaggtctcaggaaatgaagaaacacggtgaagggctaagcatacagagt 780
|||||||||||||| |||| |||||||||||||| || ||||||||||||||| ||||||
Sbjct: 304 gaggagtttgtcagctctccggaaatgaagaaacccgctgaagggctaagcatccagagt 245
Query: 781 agtagcaaggccacca-ttcagaccacaaatggggaaaaaatgttgattgattag 834
| |||| ||||||||| |||||||||||||| |||||||||| ||| ||||||||
Sbjct: 244 actagctaggccaccacttcagaccacaaatcgggaaaaaatattgcttgattag 190
>gnl|LJGI|AV778557 weakly similar to UniRef100_Q9LF41 Cluster: Ubiquitin-fusion
degradation protein-like; n=1; Arabidopsis thaliana|Rep:
Ubiquitin-fusion degradation protein-like - Arabidopsis
thaliana (Mouse-ear cress), partial (4%)
Length = 500
Score = 226 bits (114), Expect = 2e-58
Identities = 189/210 (90%), Gaps = 3/210 (1%)
Strand = Plus / Minus
Query: 624 tcagagacatcttcttagtgatgcttctgacccattcaaccgttctcatcttactgcgga 683
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 500 tcagagacatcttcttagtgatgcttctgaccccgtccaccgttctcatcttactgcgga 441
Query: 684 tatgctgattcctgatgttgaactaaaagcacgaattgaggagtttgtcaggtctcagga 743
|||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct: 440 tatgctgattcctgatgttggacttaaagcacgaattgaggagtttgtccggtctcaggc 381
Query: 744 aatgaagaaacacggtgaagggctaagca-tacagagtagt-agcaaggccaccattcag 801
||||||||||| || |||||||||||||| ||| ||||||| ||| ||||| || ||| |
Sbjct: 380 aatgaagaaacccgctgaagggctaagcactaccgagtagtcagccaggccccccttccg 321
Query: 802 accacaaat-ggggaaaaaatgttgattga 830
||| | ||| |||| || ||||||||||||
Sbjct: 320 acccccaatcgggggaacaatgttgattga 291
>gnl|LJGI|BP065454
Length = 240
Score = 168 bits (85), Expect = 3e-41
Identities = 91/93 (97%)
Strand = Plus / Minus
Query: 742 gaaatgaagaaacacggtgaagggctaagcatacagagtagtagcaaggccaccattcag 801
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaaatgaagaaactcggtgaagggctaagcatacagagtagtagcaaggccaccattcag 181
Query: 802 accacaaatggggaaaaaatgttgattgattag 834
||||||||||||||||||||| |||||||||||
Sbjct: 180 accacaaatggggaaaaaatgctgattgattag 148