Miyakogusa Predicted Gene

Lj2g3v1058150.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1058150.1 Non Chatacterized Hit- tr|Q9M1C6|Q9M1C6_ARATH
Putative uncharacterized protein T2O9.150
OS=Arabidops,33.33,3e-19,seg,NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL; UBN2,NULL,gene.g40687.t1.1
         (555 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73421 weakly similar to UniRef100_Q9M197 Cluster: Cop...  1037   0.0  

>gnl|LJGI|TC73421 weakly similar to UniRef100_Q9M197 Cluster: Copia-type reverse
           transcriptase-like protein; n=1; Arabidopsis
           thaliana|Rep: Copia-type reverse transcriptase-like
           protein - Arabidopsis thaliana (Mouse-ear cress),
           partial (3%)
          Length = 888

 Score = 1037 bits (523), Expect = 0.0
 Identities = 523/523 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggaaacgtttgatggagctgtgtttaacaaccagtggatatagagatattatgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgtggaaacgtttgatggagctgtgtttaacaaccagtggatatagagatattatgaag 425

                                                                       
Query: 61  aaaggttttgtcgaaccaactgaagaagataaaggaaaagctgatgagcaacaagttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaaggttttgtcgaaccaactgaagaagataaaggaaaagctgatgagcaacaagttgag 485

                                                                       
Query: 121 aaagatcgtatgctcaaccaaaaagctttgctattgatctgtcaatcaatggagctatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaagatcgtatgctcaaccaaaaagctttgctattgatctgtcaatcaatggagctatct 545

                                                                       
Query: 181 gtttttgagaaaattttccatgccaaatccgcaaaagaggcttgggaaatcttgatcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtttttgagaaaattttccatgccaaatccgcaaaagaggcttgggaaatcttgatcaat 605

                                                                       
Query: 241 acatatgaaggtgctgaccctgtcaaacgaacgaggttgcaaggtttaaaacgccagttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acatatgaaggtgctgaccctgtcaaacgaacgaggttgcaaggtttaaaacgccagttc 665

                                                                       
Query: 301 gagctgatggagcaaggaagagatgaaagcattcgtgattatttttcacgaatggacaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gagctgatggagcaaggaagagatgaaagcattcgtgattatttttcacgaatggacaag 725

                                                                       
Query: 361 ctcgtcaacgaaatgaaatccaacggcgatgacataaaggagaaagatgttgtggacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctcgtcaacgaaatgaaatccaacggcgatgacataaaggagaaagatgttgtggacaaa 785

                                                                       
Query: 421 atcatgcgcacgctctcaactcgttttgattatgtggtggcagccattgaagaagcaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atcatgcgcacgctctcaactcgttttgattatgtggtggcagccattgaagaagcaaag 845

                                                      
Query: 481 gatctcacaaaaatgactctaaatgatctgcaagcatctttgg 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gatctcacaaaaatgactctaaatgatctgcaagcatctttgg 888