Miyakogusa Predicted Gene

Lj2g3v1035930.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1035930.1 Non Chatacterized Hit- tr|J3LKG8|J3LKG8_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB03G1,67.11,2e-19,no
description,Helix-loop-helix domain; coiled-coil,NULL; HLH,
helix-loop-helix DNA-binding domain,H,CUFF.36064.1
         (279 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70099 similar to UniRef100_A7QI73 Cluster: Chromosome...    78   3e-14

>gnl|LJGI|TC70099 similar to UniRef100_A7QI73 Cluster: Chromosome chr17 scaffold_101,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_101, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (84%)
          Length = 676

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 67  cttgtttcgaagttgcgtcaacttgttcctgagattcgagataggcgttctgacaaggta 126
           ||||| || |||||||  || ||| |||| |||||||| || ||||| ||||||||||| 
Sbjct: 348 cttgtctccaagttgcaacagcttcttccagagattcgtgagaggcgctctgacaaggtt 407

                                                          
Query: 127 tcagcatctaaagtcctgcatgagacctgcaactacatcagaagctt 173
           |||||||| || ||| |||| ||||| ||||||||||| ||||||||
Sbjct: 408 tcagcatcaaaggtcttgcaagagacatgcaactacattagaagctt 454