Miyakogusa Predicted Gene
- Lj2g3v1034620.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1034620.1 Non Chatacterized Hit- tr|I1J7R6|I1J7R6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,89.55,0,PH
domain-like,NULL; HMG-box,High mobility group, superfamily; no
description,High mobility group, s,CUFF.36066.1
(1929 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72950 similar to UniRef100_O04235 Cluster: FACT compl... 1156 0.0
gnl|LJGI|TC72019 similar to UniRef100_O04235 Cluster: FACT compl... 995 0.0
gnl|LJGI|TC69398 similar to UniRef100_O04235 Cluster: FACT compl... 535 e-151
gnl|LJGI|GO038073 similar to UniRef100_O04235 Cluster: FACT comp... 505 e-142
gnl|LJGI|FS338642 similar to UniRef100_A7PMN7 Cluster: Chromosom... 222 6e-57
>gnl|LJGI|TC72950 similar to UniRef100_O04235 Cluster: FACT complex subunit SSRP1;
n=1; Vicia faba|Rep: FACT complex subunit SSRP1 - Vicia
faba (Broad bean), partial (31%)
Length = 698
Score = 1156 bits (583), Expect = 0.0
Identities = 603/607 (99%), Gaps = 2/607 (0%)
Strand = Plus / Plus
Query: 1 atgacagacggtggtcacctcttcaacaacatcaccctcggcggccgcggcggcacgaat 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 93 atgacagacggtggtcacctcctcaacaacatcaccctcggcggccgcggcggcacgaat 152
Query: 61 ccagggcagataaaaatattctctggaggaattgcatggaaaagacaggggggtggtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ccagggcagataaaaatattctctggaggaattgcatggaaaagacaggggggtggtaaa 212
Query: 121 tcaattgagattgataaagctgatataatgggggtcacatggatgaaagttccaaggact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tcaattgagattgataaagctgatataatgggggtcacatggatgaaagttccaaggact 272
Query: 181 aatcagcttggtgttcagatcaaagatgggctgtactacaaatttactggattccgtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aatcagcttggtgttcagatcaaagatgggctgtactacaaatttactggattccgtgat 332
Query: 241 caggatgttgtaagcttgaccagttttttccaaaataactttggaatatctgtagatgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caggatgttgtaagcttgaccagttttttccaaaataactttggaatatctgtagatgag 392
Query: 301 aagcagctttctgttagtgggcgcaattggggagaagttgatctaaatggaaatatgctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagcagctttctgttagtgggcgcaattggggagaagttgatctaaatggaaatatgctg 452
Query: 361 gcattcatggttggttcaaagcaatctttcgaggtgtctttagctgatgtctctcaaacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gcattcatggttggttcaaagcaatctttcgaggtgtctttagctgatgtctctcaaacg 512
Query: 421 acgcttcaagggaaaaatgatgtgatgttggagttccatgtggatgacacaactggagct 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 513 acgcttcaagggaaaaatgatgtgatgttggagttccatgtggatgacacgactggagct 572
Query: 481 aatgagaaagattcattgatggagttaagtttccatataccaaattccaatacccagtat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aatgagaaagattcattgatggagttaagtttccatataccaaattccaatacccagtat 632
Query: 541 gttggcgatgaaaatcatactcctgctcaggttttccgtgataaaataatgtctatggct 600
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 633 gttggcgatgaaaatcatactcctgctca-gttttccgtgat-aaataatgtctatggct 690
Query: 601 gatgtcg 607
|||||||
Sbjct: 691 gatgtcg 697
>gnl|LJGI|TC72019 similar to UniRef100_O04235 Cluster: FACT complex subunit SSRP1; n=1;
Vicia faba|Rep: FACT complex subunit SSRP1 - Vicia faba
(Broad bean), partial (64%)
Length = 1815
Score = 995 bits (502), Expect = 0.0
Identities = 896/1029 (87%), Gaps = 13/1029 (1%)
Strand = Plus / Plus
Query: 578 gtgataaaataatgtctatggctgatgtcggtgctggaggtgaagattctgttgttacat 637
||||| |||||||| ||||||||||||| | |||||||||||||||| ||||||||||||
Sbjct: 270 gtgatgaaataatgcctatggctgatgttgatgctggaggtgaagatgctgttgttacat 329
Query: 638 ttgatggtattgcagtccttacaccaagaggacgttacagtgttgagttacacctgtcat 697
|||| ||||||| | || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 330 ttgagggtattggaatctttacaccaagaggacgttacagtgttgagttacacctctcat 389
Query: 698 tcttgcggcttcaaggacaggctaatgattttaaaatccaatatagcagtgtggttcgcc 757
|||| || ||| ||||| |||||||||||| |||||||| ||||||||| | |||||||
Sbjct: 390 tcttccgacttagaggaccggctaatgatttcaaaatccagtatagcagtatagttcgcc 449
Query: 758 tatttttacttcctaagtccaatcagccacatacttttgtcattgttagtcttgatcccc 817
||| |||||||||||||| |||||||||| |||||||||| || ||||||||||||| |
Sbjct: 450 tatatttacttcctaagttaaatcagccacgtacttttgtcgttattagtcttgatcctc 509
Query: 818 ctattcggaaaggacaaactttgtaccctcatattgtgatgcagtttgaaactgatgttg 877
|||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| | |
Sbjct: 510 ctattcgggaaggacaaacgttgtaccctcatattgtgatgcagtttgaatctgatttcg 569
Query: 878 tttttcaaagtgaattggcaataaacgaagatctttataacactaagtacaaggacaagt 937
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 570 ttgttcaatgtgaattggcaataaacgaagatctttataacactaagtacaacgacaagt 629
Query: 938 tggagctgtcttataaggggctaatccatgaagtgttcaccacaatattacgtggcttat 997
||||||| ||||||||||| || ||||||| ||||||||| ||||||||| ||||||| |
Sbjct: 630 tggagctttcttataagggtctgatccatggagtgttcactacaatattatgtggcttgt 689
Query: 998 ctggggctaaagttaccaagcctggaaaatttaggagttgtctagatggttatgcagtga 1057
||||| | |||||||| |||||||||| ||||||||||| | || |||||||||||||||
Sbjct: 690 ctgggtccaaagttacaaagcctggaacatttaggagttttgtacatggttatgcagtga 749
Query: 1058 aatcatctttgaaagctgaagatggaattctgtatccccttgagaagagcttc-tttttc 1116
|||||||||||||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct: 750 aatcatctttgaaagctgaagaaggttatctgtatccccttgagaagagcttcttttttt 809
Query: 1117 ctacctaaacctcccactcttattcttcatgaagaggttgactatgtagaatttgagcga 1176
||||||||||||||||||||||||||||| |||||| |||||||| | | |||||||| |
Sbjct: 810 ctacctaaacctcccactcttattcttcacgaagagattgactatctgggatttgagcaa 869
Query: 1177 catgctgccggtggttcaaatatgcattattttgaccttcttatcagattaaaatctgag 1236
||| |||| |||||||||| || |||||| ||||||| |||||| |||||||||||
Sbjct: 870 catattgcccgtggttcaaaaatatgctattttcaccttctcatcagactaaaatctgag 929
Query: 1237 caagagcatctcttccgcaatattcagagaaatgaataccataatttgtatagttttatc 1296
||||||||||||||| ||||||||||||||||||||| | | || ||| | ||||||
Sbjct: 930 caagagcatctcttctgcaatattcagagaaatgaattcaacaagttgactgcgtttatc 989
Query: 1297 agggaaaagggcttaaaaattatgaacttaggagg------tgcccagccaactgttggt 1350
| |||||| |||||| | ||| ||||| || | |||||||||| |||||| |
Sbjct: 990 atatcaaaggggttaaaattgatggacttaagaagtgcccatgcccagccagctgttgct 1049
Query: 1351 atggctcaagttcttgagaatgatgatgatgatgctgttgatccacatctagagcgcatt 1410
|||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 1050 ttggctcggattcttggga------atgatgatgctgttgatccacatctagagcgcatt 1103
Query: 1411 aaaaatgaagctggtggagatgaaagtgatgaggaggatgaagattttgttcttgacaag 1470
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1104 aaaaatgaagctggtggagatgaaagtgatgaggaggatgaagattttgttgttgacaag 1163
Query: 1471 gatgatggaggttctcctactgatgattctnnnnnnnatgattctgatggtagtgatagt 1530
||||||||||||||||| |||||||||| | | ||||||||| | ||| ||
Sbjct: 1164 gatgatggaggttctccaactgatgattgtgggggagaaaattctgatgccaacgatggt 1223
Query: 1531 ggtgatgagaaagagaagcctgccaaaaaggaaccaaagaaggatctgccttctaaggca 1590
|| ||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||
Sbjct: 1224 ggggatgagaaagagaagcctgccaaaaagaaaccagagaaggatctgtctactaaggca 1283
Query: 1591 tctacttct 1599
| |||||||
Sbjct: 1284 tgtacttct 1292
Score = 240 bits (121), Expect = 3e-62
Identities = 237/274 (86%), Gaps = 15/274 (5%)
Strand = Plus / Plus
Query: 1660 gacccaaatgcacccaagagggcaatgtctggtttcatgttcttttcgcaaatggaaaga 1719
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct: 1350 gacccaaatgcacccaagagggcaatgtctggtttcatggtcttttctcaaatggaaaca 1409
Query: 1720 gagaatctaaagaaaactaatcctggaatttcatttacggatgttgggagagtacttgga 1779
||||| ||||||| ||||||| |||||||||||||| |||| ||||||||||
Sbjct: 1410 gagaa---------aactaattctggaatgtcatttacggatgtggggaaagtacttgga 1460
Query: 1780 gagaaatggaaaaagatgtcaacggaggagaaagaaccatatgaggtaaaagc---ccgt 1836
||||||||||||||||||||| ||||||| ||||||||||| |||| |||||| |||
Sbjct: 1461 gagaaatggaaaaagatgtcagcggaggataaagaaccatacgaggcaaaagctgcccgg 1520
Query: 1837 gccgataagaaacggtatatggatga-gattagtggctacaagaatccacaaccgatgaa 1895
| ||||||||| ||||||||||| |||||||||||||||||| ||| ||| ||||
Sbjct: 1521 gatgataagaaattttatatggatgaagattagtggctacaagaaccca--acccgtgaa 1578
Query: 1896 tgttgattcaggaaatgaatctgacagtccctaa 1929
|||||||||| ||||||||||||||||| |||||
Sbjct: 1579 tgttgattcaagaaatgaatctgacagtgcctaa 1612
Score = 65.9 bits (33), Expect = 9e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 19 ctcttcaacaacatcaccctcggcggccgcggcggcacgaa 59
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 83 ctcttcaacaacatcaccctcgcaggccgcggcggcacgaa 123
Score = 56.0 bits (28), Expect = 8e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 486 gaaagattcattgatggagttaagtttccatataccaaattccaatacccagtatgttgg 545
|||||||||||| | |||| ||||||||| || || |||||||| |||||||||||| |
Sbjct: 121 gaaagattcattcagggagaaaagtttccacatgcccaattccaacacccagtatgttag 180
Query: 546 cgatgaaa 553
|||||||
Sbjct: 181 tgatgaaa 188
>gnl|LJGI|TC69398 similar to UniRef100_O04235 Cluster: FACT complex subunit SSRP1; n=1;
Vicia faba|Rep: FACT complex subunit SSRP1 - Vicia faba
(Broad bean), partial (26%)
Length = 626
Score = 535 bits (270), Expect = e-151
Identities = 270/270 (100%)
Strand = Plus / Plus
Query: 1660 gacccaaatgcacccaagagggcaatgtctggtttcatgttcttttcgcaaatggaaaga 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gacccaaatgcacccaagagggcaatgtctggtttcatgttcttttcgcaaatggaaaga 291
Query: 1720 gagaatctaaagaaaactaatcctggaatttcatttacggatgttgggagagtacttgga 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gagaatctaaagaaaactaatcctggaatttcatttacggatgttgggagagtacttgga 351
Query: 1780 gagaaatggaaaaagatgtcaacggaggagaaagaaccatatgaggtaaaagcccgtgcc 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gagaaatggaaaaagatgtcaacggaggagaaagaaccatatgaggtaaaagcccgtgcc 411
Query: 1840 gataagaaacggtatatggatgagattagtggctacaagaatccacaaccgatgaatgtt 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gataagaaacggtatatggatgagattagtggctacaagaatccacaaccgatgaatgtt 471
Query: 1900 gattcaggaaatgaatctgacagtccctaa 1929
||||||||||||||||||||||||||||||
Sbjct: 472 gattcaggaaatgaatctgacagtccctaa 501
Score = 281 bits (142), Expect = 8e-75
Identities = 162/171 (94%)
Strand = Plus / Plus
Query: 1429 gatgaaagtgatgaggaggatgaagattttgttcttgacaaggatgatggaggttctcct 1488
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gatgaaagtgatgaggaggatgaagattttgttcctgacaaggatgatggaggttctcct 60
Query: 1489 actgatgattctnnnnnnnatgattctgatggtagtgatagtggtgatgagaaagagaag 1548
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actgatgattctgggggggatgattctgatggtagtgatagtggtgatgagaaagagaag 120
Query: 1549 cctgccaaaaaggaaccaaagaaggatctgccttctaaggcatctacttct 1599
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 121 cctgccaaaaaggaaccaaagaaggatctgccttctgaggcatctacttct 171
>gnl|LJGI|GO038073 similar to UniRef100_O04235 Cluster: FACT complex subunit SSRP1; n=1;
Vicia faba|Rep: FACT complex subunit SSRP1 - Vicia faba
(Broad bean), partial (37%)
Length = 831
Score = 505 bits (255), Expect = e-142
Identities = 348/380 (91%), Gaps = 1/380 (0%)
Strand = Plus / Minus
Query: 1213 cttcttatcagattaaaatctgagcaagagcatctcttccgcaatattcagagaaatgaa 1272
|||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct: 830 cttcttatcagactaaaatctgagcaagagcatctct-ccgtaatattcagagaaacgaa 772
Query: 1273 taccataatttgtatagttttatcagggaaaagggcttaaaaattatgaacttaggaggt 1332
||| | ||||||| |||||||| ||| |||| | ||||||||||||||||||||||||
Sbjct: 771 tacgacaatttgttaagttttataaggtcaaagagtttaaaaattatgaacttaggaggt 712
Query: 1333 gcccagccaactgttggtatggctcaagttcttgagaatgatgatgatgatgctgttgat 1392
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 711 gcccagccaactgttggtatggctcaggttcttgagaatgatcatgatgatgctgttgat 652
Query: 1393 ccacatctagagcgcattaaaaatgaagctggtggagatgaaagtgatgaggaggatgaa 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ccacatctagagcgcattaaaaatgaagctggtggagatgaaagtgatgaggaggatgaa 592
Query: 1453 gattttgttcttgacaaggatgatggaggttctcctactgatgattctnnnnnnnatgat 1512
||||||||| |||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct: 591 gattttgttgttgacaaggatgatggtggttctccaactgatgagtctggtggggaagat 532
Query: 1513 tctgatggtagtgatagtggtgatgagaaagagaagcctgccaaaaaggaaccaaagaag 1572
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 531 tctgatgctagtgatagtggtgatgagaaagagaagcctgccaaagtggaaccaaagaag 472
Query: 1573 gatctgccttctaaggcatc 1592
| |||| |||||||||||||
Sbjct: 471 gttctgtcttctaaggcatc 452
Score = 412 bits (208), Expect = e-114
Identities = 250/264 (94%)
Strand = Plus / Minus
Query: 1660 gacccaaatgcacccaagagggcaatgtctggtttcatgttcttttcgcaaatggaaaga 1719
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 386 gacccaaatgcacccaagagggcaatgtctggtttcatgttcttttctcaaatggaaaga 327
Query: 1720 gagaatctaaagaaaactaatcctggaatttcatttacggatgttgggagagtacttgga 1779
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 326 gagaatctgaagaaaactaatcctggaatttcatttacggatgtggggagagtacttgga 267
Query: 1780 gagaaatggaaaaagatgtcaacggaggagaaagaaccatatgaggtaaaagcccgtgcc 1839
||||||||||| ||||| ||| ||||||| ||||| |||||||||| ||||||||||||
Sbjct: 266 gagaaatggaagaagatatcagcggaggataaagagccatatgaggcaaaagcccgtgct 207
Query: 1840 gataagaaacggtatatggatgagattagtggctacaagaatccacaaccgatgaatgtt 1899
|||| |||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 206 gataggaaacgttacatggatgagattagtggctacaagaatccacaacccatgaatgtt 147
Query: 1900 gattcaggaaatgaatctgacagt 1923
||||||||||||||||||||||||
Sbjct: 146 gattcaggaaatgaatctgacagt 123
>gnl|LJGI|FS338642 similar to UniRef100_A7PMN7 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 256
Score = 222 bits (112), Expect = 6e-57
Identities = 145/156 (92%)
Strand = Plus / Plus
Query: 12 tggtcacctcttcaacaacatcaccctcggcggccgcggcggcacgaatccagggcagat 71
|||||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct: 99 tggtcatctcttcaacaacatcaccgtcggaggccgcggcggcacgaatccaggccagat 158
Query: 72 aaaaatattctctggaggaattgcatggaaaagacaggggggtggtaaatcaattgagat 131
||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 159 aaaaatacatcctggaggaattgtatggaaaagacaggggggtggtaaatcaattgaggt 218
Query: 132 tgataaagctgatataatgggggtcacatggatgaa 167
||||||||||||||||||||||||||| ||||||||
Sbjct: 219 tgataaagctgatataatgggggtcacgtggatgaa 254