Miyakogusa Predicted Gene
- Lj2g3v1022350.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1022350.1 Non Chatacterized Hit- tr|I1N5Z6|I1N5Z6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.44960
PE,84.37,0,PAH,Paired amphipathic helix; Histone deacetylase (HDAC)
interacting,Histone deacetylase interacting,CUFF.35987.1
(4152 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC79665 similar to UniRef100_A7PMK0 Cluster: Chromosome... 971 0.0
gnl|LJGI|BW595794 similar to UniRef100_A7PMK0 Cluster: Chromosom... 763 0.0
gnl|LJGI|TC69257 similar to UniRef100_A7PMK0 Cluster: Chromosome... 444 e-123
gnl|LJGI|FS358207 105 2e-21
gnl|LJGI|BW600158 similar to UniRef100_A7Q2L0 Cluster: Chromosom... 60 1e-07
gnl|LJGI|AV415593 similar to UniRef100_Q0JRB9 Cluster: Os01g0109... 58 5e-07
gnl|LJGI|FS354034 54 7e-06
>gnl|LJGI|TC79665 similar to UniRef100_A7PMK0 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 537
Score = 971 bits (490), Expect = 0.0
Identities = 529/538 (98%), Gaps = 3/538 (0%)
Strand = Plus / Plus
Query: 3026 acagtgaaaatgtttctgaagctggggaagatgtctcaggcagtgagtccgctggcgatg 3085
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagtgaaaatgtgtctga-gctggggaagatgtctcaggcagtgagtccgctggcgatg 59
Query: 3086 aatgcttccaggaagaccatgaggaggatgatatagaacatgatgatgttgatggtaagg 3145
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aatgcttccaggaagagcatgaggaggatgatatagaacatgatgatgttgatggtaagg 119
Query: 3146 ctgagagtgaaggtgaagctgaggggatgtgtgatgcccaaggtggaggggatagctcat 3205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctgagagtgaaggtgaagctgaggggatgtgtgatgcccaaggtggaggggatagctcat 179
Query: 3206 ctttgcctttgtcagagaggttcctttcgtctgtgaagcctctcacaaagcatgtatcgg 3265
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctttgccttagtcagagaggttcctttcgtctgtgaagcctctcacaaagcatgtatcgg 239
Query: 3266 cagtttcatttgctgaagaaatgaaggattcaagggtgttttatgggaatgacgatttct 3325
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 240 cagtttcatttgctgaagaaatgaaggattcaagggtgttgaatgggaatgacgatttct 299
Query: 3326 atgcgctttttaggcttcatcaaattctttacgagaggatcttatcagcgaaaataaatt 3385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atgcgctttttaggcttcatcaaattctttacgagaggatcttatcagcgaaaataaatt 359
Query: 3386 caatgagtgctgaaatgaaatggaaggcaaaagatgctagttcccctgatccttactcaa 3445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caatgagtgctgaaatgaaatggaaggcaaaagatgctagttcccctgatccttactcaa 419
Query: 3446 gatttatgaat-gcattgtacaacttgcttgatggatctgttgagaattcaaagtttgaa 3504
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gatttatgaatggcattgtacaacttgcttgatggatctgttgagaattcaaagtttgaa 479
Query: 3505 gatgagtgccgagcaa-ttactggaaaccagtcttatgtcttattcacattggataaa 3561
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gatgagtgccgagcaaggtactggaaaccagtcttatgtcttattcacattggataaa 537
>gnl|LJGI|BW595794 similar to UniRef100_A7PMK0 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 434
Score = 763 bits (385), Expect = 0.0
Identities = 399/401 (99%), Gaps = 2/401 (0%)
Strand = Plus / Plus
Query: 244 cttgaggtcatgaaagatttcaaggcccaaaggactgacactgctggtgtcatagcaagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 cttgaggtcatgaaagatttcaaggcccaaaggactgacactgctggtgtcatagcaagg 93
Query: 304 gtgaaggagctattcaaagggcacaaccattt-gattttt-gggtttaacactttcctgc 361
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 94 gtgaaggagctattcaaagggcacaaccattttgatttttcgggtttaacactttcctgc 153
Query: 362 caaagggatatgagataacacttgatgaggatgaggctcctgcgaagaaaactgttgaat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 caaagggatatgagataacacttgatgaggatgaggctcctgcgaagaaaactgttgaat 213
Query: 422 ttgaagaagctattagttttgtcaacaagataaagaaacgattccaaagtgatgaacatg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttgaagaagctattagttttgtcaacaagataaagaaacgattccaaagtgatgaacatg 273
Query: 482 tctacaaatcattcttggacattttgaatatgtaccgcaaagagcacaaggatattggtg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tctacaaatcattcttggacattttgaatatgtaccgcaaagagcacaaggatattggtg 333
Query: 542 aggtttacagtgaggttgctaccctttttaaggaccatcgagatttgcttgaggagttca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aggtttacagtgaggttgctaccctttttaaggaccatcgagatttgcttgaggagttca 393
Query: 602 ctagattcttaccagatacttctgcagcgccttctacacag 642
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctagattcttaccagatacttctgcagcgccttctacacag 434
>gnl|LJGI|TC69257 similar to UniRef100_A7PMK0 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 550
Score = 444 bits (224), Expect = e-123
Identities = 230/232 (99%)
Strand = Plus / Plus
Query: 3921 aaaattagatgatctttctgcgatatgcgctgccatggaaggtgttaaagtaattaatgg 3980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaattagatgatctttctgcgatatgcgctgccatggaaggtgttaaagtaattaatgg 60
Query: 3981 attggaatgtaaaattgcttgcaactcatccaagatttcttatgttcttgacacacaaga 4040
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 61 attggaatgtaaaattgcttgcaactcatcccagatttcttatgttcttgacacaccaga 120
Query: 4041 ttttttcttccgtccgaggacgaaaagacgaactccatcagcaaccacaacttcccggtc 4100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttttcttccgtccgaggacgaaaagacgaactccatcagcaaccacaacttcccggtc 180
Query: 4101 tcgcaaggacagagaagaaagataccgcagattgttggtttcctcatcataa 4152
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcgcaaggacagagaagaaagataccgcagattgttggtttcctcatcataa 232
>gnl|LJGI|FS358207
Length = 684
Score = 105 bits (53), Expect = 2e-21
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 3926 tagatgatctttctgcgatatgcgctgccatggaaggtgttaaagtaattaatggattgg 3985
||||||| |||||||||| |||| |||||||||||||||||| ||||||||||| | ||
Sbjct: 404 tagatgacctttctgcgaaatgctttgccatggaaggtgttaaggtaattaatgggtcgg 345
Query: 3986 aatgtaaaattgcttgcaactcatccaag 4014
|||||||||||| ||||| ||||||||||
Sbjct: 344 aatgtaaaattgattgcatctcatccaag 316
>gnl|LJGI|BW600158 similar to UniRef100_A7Q2L0 Cluster: Chromosome chr1 scaffold_46,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_46, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 436
Score = 60.0 bits (30), Expect = 1e-07
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 3494 caaagtttgaagatgagtgccgagcaattactggaaaccagtcttatgtcttattcacat 3553
|||| ||||||||||| || ||||| |||| ||||| ||||| || |||||||||||||
Sbjct: 13 caaaatttgaagatgactgtcgagctattattggaattcagtcgtacgtcttattcacat 72
Query: 3554 tggataaattgatatataaattaatcagacagcttcaaactgttgc 3599
| || || ||||||||||| | | | |||||||||| |||||||
Sbjct: 73 tagacaagctgatatataaacttgttaaacagcttcaagctgttgc 118
>gnl|LJGI|AV415593 similar to UniRef100_Q0JRB9 Cluster: Os01g0109700 protein; n=3; Oryza
sativa Japonica Group|Rep: Os01g0109700 protein - Oryza
sativa subsp. japonica (Rice), partial (9%)
Length = 416
Score = 58.0 bits (29), Expect = 5e-07
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 3141 taaggctgagagtgaaggtgaagctgaggggatgtgtgatgccca 3185
||||||||||||||||||||||||||| || ||| |||||||||
Sbjct: 128 taaggctgagagtgaaggtgaagctgaaggaatggttgatgccca 172
>gnl|LJGI|FS354034
Length = 748
Score = 54.0 bits (27), Expect = 7e-06
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 3926 tagatgatctttctgcgatatgcgctgccatggaaggtgttaa 3968
||||||| |||||||||| |||| ||||||||||||||||||
Sbjct: 368 tagatgacctttctgcgaaatgctttgccatggaaggtgttaa 326