Miyakogusa Predicted Gene

Lj2g3v1014470.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1014470.1 Non Chatacterized Hit- tr|D8SU27|D8SU27_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,58.33,5e-19,VMA21,Vacuolar ATPase assembly integral
membrane protein VMA21-like domain,CUFF.35913.1
         (315 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66439 similar to UniRef100_A7P2M9 Cluster: Chromosome...   624   e-179

>gnl|LJGI|TC66439 similar to UniRef100_A7P2M9 Cluster: Chromosome chr1 scaffold_5,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_5, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (78%)
          Length = 924

 Score =  624 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagagtgattcagaagtttttcattgcatcaatgttcatgtgggcagtccctattgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atgagagtgattcagaagtttttcattgcatcaatgttcatgtgggcagtccctattgca 244

                                                                       
Query: 61  atattacatgcttttaaccataatctgcttcctggaacatccaatctgtctccttactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atattacatgcttttaaccataatctgcttcctggaacatccaatctgtctccttactct 304

                                                                       
Query: 121 gtgacactagtgagcggatttcttgctgtcatatctgttaatgtagtcatagcattttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtgacactagtgagcggatttcttgctgtcatatctgttaatgtagtcatagcattttac 364

                                                                       
Query: 181 atttatttggcaatgagagaacctgcagacaaacacgagcctgatccaaggtttctcgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atttatttggcaatgagagaacctgcagacaaacacgagcctgatccaaggtttctcgcc 424

                                                                       
Query: 241 gaggccaaagctagtataaaccagacttcaggagaggctcagcaatcttcccagccttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaggccaaagctagtataaaccagacttcaggagaggctcagcaatcttcccagccttcc 484

                          
Query: 301 aagaaagaacagtag 315
           |||||||||||||||
Sbjct: 485 aagaaagaacagtag 499