Miyakogusa Predicted Gene
- Lj2g3v0933930.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0933930.1 Non Chatacterized Hit- tr|I1N5J5|I1N5J5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.39497
PE,77.82,0,RNA-binding domain, RBD,NULL; coiled-coil,NULL; RRM_6,NULL;
no description,Nucleotide-binding, alpha,CUFF.35797.1
(2748 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63418 similar to UniRef100_A7PM49 Cluster: Chromosome... 1518 0.0
gnl|LJGI|TC65014 weakly similar to UniRef100_A7PM50 Cluster: Chr... 801 0.0
gnl|LJGI|AV779303 similar to UniRef100_A9SSQ5 Cluster: Predicted... 111 2e-23
>gnl|LJGI|TC63418 similar to UniRef100_A7PM49 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 1138
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 1975 gctacaggactcaagggtgaaatagttaccgaacatgctgcaaagagacccaaaacaagc 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctacaggactcaagggtgaaatagttaccgaacatgctgcaaagagacccaaaacaagc 60
Query: 2035 atgacgactgatgttgccaaactcacttctcctcaatcgtctgatgctgatcctggaatg 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgacgactgatgttgccaaactcacttctcctcaatcgtctgatgctgatcctggaatg 120
Query: 2095 acatctctacatgcagaggcaacaactgataggaataaacagttggtcagtactgtatcc 2154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acatctctacatgcagaggcaacaactgataggaataaacagttggtcagtactgtatcc 180
Query: 2155 caaagtcctaaagcaagtacaacaatgagagtgctagaacctacaggcttgaaccagcca 2214
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 181 caaagtcctaaagcaagtacgacaatgagagtgctagaacctacaggcttgaaacagcca 240
Query: 2215 attcaaccatttgtgcctgtaaataggtacaaattggacaatcgtcccactgcatttaga 2274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attcaaccatttgtgcctgtaaataggtacaaattggacaatcgtcccactgcatttaga 300
Query: 2275 atcatcactcctttgccagatggtctagcaaatgttgcttctttgaaggaacacttctta 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcatcactcctttgccagatggtctagcaaatgttgcttctttgaaggaacacttctta 360
Query: 2335 ccatatggagaactttcttctgtagagctagtagatgtgcaagtcgatgatagtagtcaa 2394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccatatggagaactttcttctgtagagctagtagatgtgcaagtcgatgatagtagtcaa 420
Query: 2395 caagaggcacatataaatttcactactcgccgtgcagctgagagggcgtttattaatggt 2454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caagaggcacatataaatttcactactcgccgtgcagctgagagggcgtttattaatggt 480
Query: 2455 aaatgctggaaggaccacaatctggaattcatgtggctggcttccgctaattctagcaat 2514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaatgctggaaggaccacaatctggaattcatgtggctggcttccgctaattctagcaat 540
Query: 2515 gcaactggtagtagagaaccttctctatccgctcccaaggagcccttagatagagatgac 2574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcaactggtagtagagaaccttctctatccgctcccaaggagcccttagatagagatgac 600
Query: 2575 cattctgaagaaaaattgggaaatgcggtaaaccaagaagcagctgtatcagatggtgag 2634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cattctgaagaaaaattgggaaatgcggtaaaccaagaagcagctgtatcagatggtgag 660
Query: 2635 cgtaaaaattctgaaaatgaaaatggtttgaaggttatggaaatggaaccaggtgaagat 2694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgtaaaaattctgaaaatgaaaatggtttgaaggttatggaaatggaaccaggtgaagat 720
Query: 2695 ctccagtgttccccaaggcaagtttcttctgccaaacaatcaccagagggcaat 2748
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctccagtgttccccaaggcaagtttcttctgccaaacaatcaccagagggcaat 774
>gnl|LJGI|TC65014 weakly similar to UniRef100_A7PM50 Cluster: Chromosome chr14
scaffold_21, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_21, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 646
Score = 801 bits (404), Expect = 0.0
Identities = 407/408 (99%)
Strand = Plus / Plus
Query: 1 atggagctgaaagtttcatctccaaaactagagtctgttgcaccttctgattgtctcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atggagctgaaagtttcatctccaaaactagagtctgttgcaccttctgattgtctcagt 298
Query: 61 gatcccgaggaaaaggaagtgagtgatgacgatgatgatgatcggaatcataagcatcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gatcccgaggaaaaggaagtgagtgatgacgatgatgatgatcggaatcataagcatcgg 358
Query: 121 aggcgggatgatcgttctcagtctttggagagagatgtttcagatcctgttattagcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aggcgggatgatcgttctcagtctttggagagagatgtttcagatcctgttattagcagg 418
Query: 181 ccattcaggaagcgcaacaagaattttggaaatcggcctccgtttaagggaaatgagtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ccattcaggaagcgcaacaagaattttggaaatcggcctccgtttaagggaaatgagtct 478
Query: 241 ctatcctttgaaacactgaaagcttatggcgatgccgctacagataaagagttctactcc 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 479 ctatcctttgaaacactgaaagcttatggcgatgccgctacagacaaagagttctactcc 538
Query: 301 aagtttgagagaaggcgtcctggctttactccaggtcctcgaacacctttagatatgagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aagtttgagagaaggcgtcctggctttactccaggtcctcgaacacctttagatatgagt 598
Query: 361 caaagactacggacaaaccaatcatttactgtagatccaggtgctggc 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 caaagactacggacaaaccaatcatttactgtagatccaggtgctggc 646
>gnl|LJGI|AV779303 similar to UniRef100_A9SSQ5 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein -, partial (1%)
Length = 496
Score = 111 bits (56), Expect = 2e-23
Identities = 175/198 (88%), Gaps = 15/198 (7%)
Strand = Plus / Minus
Query: 2566 agagatgaccattctg-aagaaaaat-tgggaaatg-cggtaaaccaagaagc--agctg 2620
|||||||||||||||| ||||||||| ||||||||| ||||||||| ||| | |||||
Sbjct: 496 agagatgaccattctgcaagaaaaatatgggaaatggcggtaaacccagacacccagctg 437
Query: 2621 ta-tcagatgg-tgagc-gtaaaaatt-ctgaaa-atgaaaatgg--tttgaaggtta-t 2672
|| |||||||| ||||| ||||||||| |||||| |||||||| | ||||||||||| |
Sbjct: 436 tactcagatggctgagccgtaaaaatttctgaaatatgaaaattggatttgaaggttaat 377
Query: 2673 ggaaatggaa-ccaggtgaagatctccagtgttcccca-aggcaagtttcttctgccaaa 2730
|||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct: 376 ggaaatggaaaccaggtgaagatctccagtgttccccctagcccagtttcttctgccaaa 317
Query: 2731 caatcaccagagggcaat 2748
| ||||||||||||||||
Sbjct: 316 ccatcaccagagggcaat 299