Miyakogusa Predicted Gene

Lj2g3v0932890.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0932890.1 tr|B9IEW5|B9IEW5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_776137 PE=4
SV=1,53.95,3e-18,Raffinose_syn,Raffinose synthase; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL,TC80236.path1.1
         (232 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80236 weakly similar to UniRef100_A7PM53 Cluster: Chr...   460   e-129
gnl|LJGI|AV777094                                                     167   4e-41

>gnl|LJGI|TC80236 weakly similar to UniRef100_A7PM53 Cluster: Chromosome chr14
           scaffold_21, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr14 scaffold_21, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (16%)
          Length = 766

 Score =  460 bits (232), Expect = e-129
 Identities = 232/232 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctcaacactggtggagcaattcaatccttggattttgatgaggctcagaatttggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgctcaacactggtggagcaattcaatccttggattttgatgaggctcagaatttggtt 363

                                                                       
Query: 61  caagttggagtaagaggcacaggagagatgagagtgttttcttcagagagaccaagtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caagttggagtaagaggcacaggagagatgagagtgttttcttcagagagaccaagtgct 423

                                                                       
Query: 121 tgtagaattgatgggaaagaagctgattttgaatatgaaggttccatggtcattattcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgtagaattgatgggaaagaagctgattttgaatatgaaggttccatggtcattattcaa 483

                                                               
Query: 181 gtaccttggcctagctcttccaagttgtcatatgttcagtatatattctgag 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtaccttggcctagctcttccaagttgtcatatgttcagtatatattctgag 535


>gnl|LJGI|AV777094 
          Length = 208

 Score =  167 bits (84), Expect = 4e-41
 Identities = 114/124 (91%)
 Strand = Plus / Minus

                                                                       
Query: 109 agaccaagtgcttgtagaattgatgggaaagaagctgattttgaatatgaaggttccatg 168
           |||||||||||||||||||| ||||| ||| || || |||||| ||| ||||||||||||
Sbjct: 208 agaccaagtgcttgtagaatcgatggtaaaaaaacttattttgcatacgaaggttccatg 149

                                                                       
Query: 169 gtcattattcaagtaccttggcctagctcttccaagttgtcatatgttcagtatatattc 228
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 148 gccatgattcaagtaccttggcctagctcttccaagttgtcatatgttcagtatatattg 89

               
Query: 229 tgag 232
           ||||
Sbjct: 88  tgag 85