Miyakogusa Predicted Gene
- Lj2g3v0932680.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0932680.1 tr|B7EPZ7|B7EPZ7_ORYSJ (Rice Genome Annotation
Project) RNA recognition motif family protein
OS=Oryz,49.37,0.00000000002,RRM_1,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; seg,NULL; no
description,Nucleotid,CUFF.35793.1
(930 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59319 similar to UniRef100_A7PM30 Cluster: Chromosome... 1844 0.0
gnl|LJGI|TC72927 similar to UniRef100_A7Q2X6 Cluster: Chromosome... 70 3e-11
>gnl|LJGI|TC59319 similar to UniRef100_A7PM30 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (79%)
Length = 1526
Score = 1844 bits (930), Expect = 0.0
Identities = 930/930 (100%)
Strand = Plus / Plus
Query: 1 atggaatcacccggcaacgaccatgtagttggtggcggagaatccaacgacgtcgccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 atggaatcacccggcaacgaccatgtagttggtggcggagaatccaacgacgtcgccaga 195
Query: 61 acctattctcacagagaagaccacgaccagcaccacaactctcaacctctcaccggcgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 acctattctcacagagaagaccacgaccagcaccacaactctcaacctctcaccggcgac 255
Query: 121 ggtgccagtcccggaaagatttttataggtggtttagcgagagaaacgaccattgcccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggtgccagtcccggaaagatttttataggtggtttagcgagagaaacgaccattgcccaa 315
Query: 181 tttatcaagcactttggtaaatatggtgagattacagattctgttatcatgaaggacagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttatcaagcactttggtaaatatggtgagattacagattctgttatcatgaaggacagg 375
Query: 241 aaaactgctcagcctcgtgggttcgggtttattacgtatgcggatccctctgtggttgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaaactgctcagcctcgtgggttcgggtttattacgtatgcggatccctctgtggttgat 435
Query: 301 aaagtcatcgaggacactcatatcatcaatggcaagcaagttgaaattaagcggacgata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaagtcatcgaggacactcatatcatcaatggcaagcaagttgaaattaagcggacgata 495
Query: 361 ccaaggggagcagttggttctaaggattttaagacaaagaaaatatttgtaggtggtatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccaaggggagcagttggttctaaggattttaagacaaagaaaatatttgtaggtggtatt 555
Query: 421 ccttcaaatgtgactgaagatgaatttagagacttcttcacacgctatggagaagtcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ccttcaaatgtgactgaagatgaatttagagacttcttcacacgctatggagaagtcaaa 615
Query: 481 gacaaccaaataatgcgtgaccactccaccaatcgatctcgtggctttgggtttatcacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gacaaccaaataatgcgtgaccactccaccaatcgatctcgtggctttgggtttatcacc 675
Query: 541 tttgactcggaggatgctgttgatgatcttctatctatggggaacaagattgactttgct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tttgactcggaggatgctgttgatgatcttctatctatggggaacaagattgactttgct 735
Query: 601 ggaactcaggtggaaatcaagaaggctgaaccaaagaagccaaacccacctactccatca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggaactcaggtggaaatcaagaaggctgaaccaaagaagccaaacccacctactccatca 795
Query: 661 tccaagcgctataatgactcaaggtcttcgtacagtagtggatatggagaagcttatgat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tccaagcgctataatgactcaaggtcttcgtacagtagtggatatggagaagcttatgat 855
Query: 721 ggctttggtgggagctatggtgctgcaggtggttacagatctagtgctgcctatgctggc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ggctttggtgggagctatggtgctgcaggtggttacagatctagtgctgcctatgctggc 915
Query: 781 aggagtggtgcttatggtgggtatggaagcgagtttggtgggtatggaggatatgctgga 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 aggagtggtgcttatggtgggtatggaagcgagtttggtgggtatggaggatatgctgga 975
Query: 841 gcaatggggccctacagaggagatccttcccttgggtttgctggtcgttatggtggaagc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 gcaatggggccctacagaggagatccttcccttgggtttgctggtcgttatggtggaagc 1035
Query: 901 tttagcagaggctatgatcttggtgggtat 930
||||||||||||||||||||||||||||||
Sbjct: 1036 tttagcagaggctatgatcttggtgggtat 1065
>gnl|LJGI|TC72927 similar to UniRef100_A7Q2X6 Cluster: Chromosome chr12 scaffold_47,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_47, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (54%)
Length = 813
Score = 69.9 bits (35), Expect = 3e-11
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 580 gggaacaagattgactttgctggaactcaggtggaaatcaagaaggctgaaccaaagaa 638
||||||| ||||||| | ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 582 gggaacatgattgacatggctggtactcaggttgagatcaagaaggctgaaccaaagaa 640