Miyakogusa Predicted Gene
- Lj2g3v0919480.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0919480.1 tr|B9DHJ7|B9DHJ7_ARATH AT5G16210 protein
(Fragment) OS=Arabidopsis thaliana GN=AT5G16210 PE=2
SV=1,35.71,0.0000000000003,LISH,LisH dimerisation motif; Lissencephaly
type-1-like homology motif,LisH dimerisation motif; SUBF,CUFF.35759.1
(1494 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60865 similar to UniRef100_A7PAV4 Cluster: Chromosome... 369 e-101
gnl|LJGI|TC81379 similar to UniRef100_A7PAV4 Cluster: Chromosome... 96 8e-19
>gnl|LJGI|TC60865 similar to UniRef100_A7PAV4 Cluster: Chromosome chr14 scaffold_9,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_9, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 1249
Score = 369 bits (186), Expect = e-101
Identities = 483/582 (82%)
Strand = Plus / Plus
Query: 495 ggatagtgagcgtcgagatcttaattgtgctgtgaaggaatatttgcttatagccggcta 554
||||| ||| ||||||||||||||||||||||| |||||||| |||||||| || || ||
Sbjct: 570 ggatactgaacgtcgagatcttaattgtgctgtaaaggaatacttgcttatggctggtta 629
Query: 555 ccgtcttactgctatgacattttatgaagaggttacagaccaaaacttggacatttggca 614
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 630 ccgtcttactgcaatgacattttatgaagaggttacagaccagaacttggacatttggca 689
Query: 615 gaatacacatgcattaataccagatgccttgcgtcattattattatcagtatcttttatc 674
|| |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 690 caacacacctgcatctgtaccagatgccttgcgtcattattattatcagtatctttcatc 749
Query: 675 tacttcagaggctgctgaggaaaaaatagcccaagttctagaaaatgaaacattactgaa 734
|||||||||||||||||||||||| | ||| ||| || || ||||||||||| ||
Sbjct: 750 aacttcagaggctgctgaggaaaaattctccctgcttcgggagaacgaaacattacttaa 809
Query: 735 agcaaatcagaggctaagtcaagaaaaggagagcttgttgaagggcaaagatttgagtga 794
||| ||| || ||| | ||||||||||||| |||||||||| || ||||||| ||
Sbjct: 810 agctaataaggtgctgaatcaagaaaaggaggccttgttgaagaacagagatttggcaga 869
Query: 795 tggtcaaataggagcattaactaaatccttggagacactacaaggagatcttaaacacaa 854
|| ||||||| ||||||||||||||||||||||| || | || |||| |||| ||||
Sbjct: 870 tgctcaaataagagcattaactaaatccttggaggcaatgcacaaagatgttaaggacaa 929
Query: 855 agaagacctggtgctagttttaaataagtctttggagaatcaaagagaggagctccacgc 914
||| || |||||| || |||||| |||| ||||| |||||||| ||| | || | |
Sbjct: 930 agagaacttggtgcaagatttaaaacagtccttggaacatcaaagaaaggtgatcaatga 989
Query: 915 tagcagagttgagaccagtaaactgaaaatgcatattgaagggtctggttctgggaagaa 974
| || ||| ||||| || | ||||||||||||||||||||||||| | || |||||
Sbjct: 990 ttgccgagctgagatcacttcactgaaaatgcatattgaagggtctcacttgggaaagaa 1049
Query: 975 tctggttgttagtgatgttgataatttccaacctgagtctatagataagtacaaggaaga 1034
||||||||||||||||||| ||| | | ||| || | ||| ||| ||||| |||||||
Sbjct: 1050 tctggttgttagtgatgttaatactgttcaatctcaatcttcagagaagtatgaggaaga 1109
Query: 1035 aattaagaaattgcagatggaaattgaagggttgaaggaaaa 1076
|||||||||| ||||||||||||| ||| | ||||||||||
Sbjct: 1110 aattaagaaactgcagatggaaatcgaattgctgaaggaaaa 1151
Score = 135 bits (68), Expect = 9e-31
Identities = 182/220 (82%)
Strand = Plus / Plus
Query: 53 aaatggatgtggagagagcttcgctgtgcaatctcgtcgtcaacttcctcttagaggaaa 112
||||||| ||||||||| |||||||||||||| ||| || ||||||||| | ||||| |
Sbjct: 128 aaatggacgtggagagatcttcgctgtgcaattgcgttgtgaacttcctcctggaggaga 187
Query: 113 actacatcctcacagcgttcgagctcctccacgagcttctcgataatggtcgcaacaatc 172
||||| | ||||| || || ||||| || |||||||||||||| |||| ||| || |||
Sbjct: 188 actacgtgctcactgcttttgagcttcttcacgagcttctcgacgatggccgcgacgatc 247
Query: 173 aagccattcgcctccagcaatatttctcagatccctctctcttccctcccaatcaaatct 232
|||| ||||||||| | || || ||||| |||||||| ||||| || ||| |||||||||
Sbjct: 248 aagcaattcgcctcaaacagtacttctccgatccctccctctttccccccgatcaaatct 307
Query: 233 ctcgctttaattctctcccattggcggatcctcaaacttt 272
||||| | | ||||||| | |||| ||||||||||||||
Sbjct: 308 ctcgcctcagctctctccgagtggctgatcctcaaacttt 347
>gnl|LJGI|TC81379 similar to UniRef100_A7PAV4 Cluster: Chromosome chr14 scaffold_9,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_9, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (56%)
Length = 2679
Score = 95.6 bits (48), Expect = 8e-19
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 1439 ttcagatacttgcagacgctttgcctaaaattgttccttatgtcttgatcaaccat 1494
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ttcagatacttgcagaggctttgcctaaaattgttccatatgtcttgatcaaccat 56