Miyakogusa Predicted Gene

Lj2g3v0911970.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0911970.1 Non Chatacterized Hit- tr|C5WNN8|C5WNN8_SORBI
Putative uncharacterized protein Sb01g050590
OS=Sorghu,56,3e-19,Tetraspannin,Tetraspanin/Peripherin; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL,gene.g40220.t1.1
         (232 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC67749 similar to UniRef100_A7PE96 Cluster: Chromosome...   214   2e-55

>gnl|LJGI|TC67749 similar to UniRef100_A7PE96 Cluster: Chromosome chr11 scaffold_13,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_13, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (33%)
          Length = 675

 Score =  214 bits (108), Expect = 2e-55
 Identities = 201/232 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcagacccagattgctacttatggaacaatgaccagaaccagctctgctacaactgc 60
           ||||| || ||||||||| |||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 40  atggctgatccagattgcaacttgtggaacaatgaccagaaccagctatgctacaattgc 99

                                                                       
Query: 61  aatgcatgcaaggcaggtctacttgggaagctcagaaaagagtggaggaaagccaatatc 120
           ||||| |||||||| ||| |||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 100 aatgcttgcaaggctggtttactggggaacctcagaaaagaatggaggaaagcaaatatc 159

                                                                       
Query: 121 atcttggttgtggctgtggtggttcttatctgggtctatctcattgcctgtagtgcctac 180
           ||  || |||||||||||||||| ||||| || |||||| ||||||| || ||||||| |
Sbjct: 160 attctgattgtggctgtggtggtccttatatgtgtctatatcattgcttgcagtgccttc 219

                                                               
Query: 181 aaaaatgctaaaacagaagacctcttccgccgctacaaacggggttgggttt 232
           || |||||  | |||||||||||||||  ||| ||||||| |||||||||||
Sbjct: 220 aagaatgcccagacagaagacctcttcgaccgttacaaacagggttgggttt 271