Miyakogusa Predicted Gene
- Lj2g3v0911660.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0911660.1 tr|A9RJW2|A9RJW2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_175641,26.14,1e-18,PPR,Pentatricopeptide repeat;
DYW_deaminase,NULL; PPR_3,Pentatricopeptide repeat; SUBFAMILY NOT
NAME,CUFF.35637.1
(1413 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61001 weakly similar to UniRef100_A7PEA5 Cluster: Chr... 1388 0.0
gnl|LJGI|GO028489 similar to UniRef100_A7P9I6 Cluster: Chromosom... 767 0.0
gnl|LJGI|FS356710 similar to UniRef100_A7QEC5 Cluster: Chromosom... 58 2e-07
>gnl|LJGI|TC61001 weakly similar to UniRef100_A7PEA5 Cluster: Chromosome chr11
scaffold_13, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (16%)
Length = 757
Score = 1388 bits (700), Expect = 0.0
Identities = 735/743 (98%), Gaps = 4/743 (0%)
Strand = Plus / Plus
Query: 1 atgaatctcaaacttcaggcatcaatagcttctgcagtttcccttccacgcacacgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 atgaatctcaaacttcaggcatcaatagcttctgcagtttcccttccacgcacacgaaac 75
Query: 61 tccattgtctcatcccatttgaacttcgcttcttccaaacctctctgcaactatgcagct 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tccattgtcccatcccatttgaacttcgcttcttccaaacctctctgcaactatgcagct 135
Query: 121 cccgataagcttcaccctcgtcgaaacggcaccagcaacagtcgttccgctcacaaggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cccgataagcttcaccctcgtcgaaacggcaccagcaacagtcgttccgctcacaaggcc 195
Query: 181 ccacatttgcagaaggccaacaacaacacctccattgaaccaaaattgaagctcgaccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ccacatttgcagaaggccaacaacaacacctccattgaaccaaaattgaagctcgaccag 255
Query: 241 agtgttcatcaaaatcaagacaccccatttgccgcaagctcctccaatgccgacttgatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agtgttcatcaaaatcaagacaccccatttgccgcaagctcctccaatgccgacttgatg 315
Query: 301 agcttgtgtgaagagggtaagctcaatcaagctttggaactcatgggtcacggtgctgtt 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agctcgtgtgaagagggtaagctcaatcaagctttggaactcatgggtcacggtgctgtt 375
Query: 361 gctgattctagtgtttatctcgcgctcttgaagttgtgtgaggattctgggtcgcttgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gctgattctagtgtttatctcgcgctcttgaagttgtgtgaggattctgggtcgcttgag 435
Query: 421 tcagggaaaagggttcatgagttcttgaagaagtcgtcgtttaatggggaagttgaagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tcagggaaaagggttcatgagttcttgaagaagtcgtcgtttaatggggaagttgaagtg 495
Query: 481 aacaacaggttgattggaatgtatgggaaatgtggcggtatgaaggatgcgcgccgggtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacaacaggttgattggaatgtatgggaaatgtggcggtatgaaggatgcgcgccgggtg 555
Query: 541 tttgataaaatgccggagaggaatttaagttcgtggtgtttgatgattagtgggtacacg 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttgataaaatgccggagaggaatttaagttcgtggtgtttgatgattagtgggtacaca 615
Query: 601 gtgaatggccgaggggatgatggtttgttggtttttcagcagatgaagcaagcaggggta 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 616 gtgaatggccgaggggatgatggtttgttggtttttcagcagatgaagcaagca-gggta 674
Query: 661 gaaccagatggggaaacttttgcgttggttttggctgcgtgtgctcgggctgaagctgtg 720
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 675 gaaccagatggggaaacttttgcgttggttttggctgcgtgtgctcgggctg-agctgtg 733
Query: 721 gaagaaggtttcatgcactttga 743
||||| |||||| |||||||||
Sbjct: 734 gaaga--gtttcacgcactttga 754
>gnl|LJGI|GO028489 similar to UniRef100_A7P9I6 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (26%)
Length = 924
Score = 767 bits (387), Expect = 0.0
Identities = 387/387 (100%)
Strand = Plus / Minus
Query: 1027 atgctggaggagaagaatagagtggctgagtatcggtgtagtatcccctataaggaagag 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atgctggaggagaagaatagagtggctgagtatcggtgtagtatcccctataaggaagag 514
Query: 1087 gtaaatgagaaattgaaaggtttgagtgggcagctgagggaagcaggttatgtgccggat 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gtaaatgagaaattgaaaggtttgagtgggcagctgagggaagcaggttatgtgccggat 454
Query: 1147 acaagatatgttctccacgacattgatgaggaggaaaaagagaaggccttgcaatatcat 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acaagatatgttctccacgacattgatgaggaggaaaaagagaaggccttgcaatatcat 394
Query: 1207 agcgaacgtttggcaattgcctatggtctcatcagtactccgccgaggactacactaaga 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agcgaacgtttggcaattgcctatggtctcatcagtactccgccgaggactacactaaga 334
Query: 1267 atcatcaagaatctacgtatatgtggagactgccacaatgctatcaaaattatgtcgaag 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atcatcaagaatctacgtatatgtggagactgccacaatgctatcaaaattatgtcgaag 274
Query: 1327 attgttgggagggagctcattgtgagggataacaagcgattccatcatttcaaagatgga 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 attgttgggagggagctcattgtgagggataacaagcgattccatcatttcaaagatgga 214
Query: 1387 aaatgctcatgtggagattattggtag 1413
|||||||||||||||||||||||||||
Sbjct: 213 aaatgctcatgtggagattattggtag 187
Score = 622 bits (314), Expect = e-177
Identities = 340/345 (98%), Gaps = 4/345 (1%)
Strand = Plus / Minus
Query: 474 tgaagtgaacaacaggttgattggaatgtatgggaaatgtggcggtatgaaggatgcgcg 533
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 907 tgaagtgaa-aacaggttgattgga-tgtatgggaaatgtggcggtatgaaggatgcgcg 850
Query: 534 ccgggtgtttgataaaatgccggagaggaatttaagttcgtggtgtttgatgattagtgg 593
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ccgggtgtttgataaat--ccggagaggaatttaagttcgtggtgtttgatgattagtgg 792
Query: 594 gtacacggtgaatggccgaggggatgatggtttgttggtttttcagcagatgaagcaagc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gtacacggtgaatggccgaggggatgatggtttgttggtttttcagcagatgaagcaagc 732
Query: 654 aggggtagaaccagatggggaaacttttgcgttggttttggctgcgtgtgctcgggctga 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aggggtagaaccagatggggaaacttttgcgttggttttggctgcgtgtgctcgggctga 672
Query: 714 agctgtggaagaaggtttcatgcactttgaatccatgaaggagtatgggattgctccttg 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agctgtggaagaaggtttcatgcactttgaatccatgaaggagtatgggattgctccttg 612
Query: 774 cagggagcactacttggaggttattaacattctggggaatgctgg 818
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cagggagcactacttggaggttattaacattctggggaatgctgg 567
>gnl|LJGI|FS356710 similar to UniRef100_A7QEC5 Cluster: Chromosome chr1 scaffold_84,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_84, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 752
Score = 58.0 bits (29), Expect = 2e-07
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 1361 agcgattccatcatttcaaagatggaaaatgctcatgtggagattattggtag 1413
||||||| ||||||||||||||||| |||||||| ||||| || || ||||||
Sbjct: 93 agcgatttcatcatttcaaagatgggaaatgctcttgtggggaatactggtag 41