Miyakogusa Predicted Gene

Lj2g3v0891260.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0891260.1 Non Chatacterized Hit- tr|I1NW04|I1NW04_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,48.94,0.0000000000002,DUF1005,Protein of unknown function
DUF1005; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NU,CUFF.35601.1
         (1266 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV780998 similar to UniRef100_A7PEF0 Cluster: Chromosom...   266   3e-70
gnl|LJGI|BW603196 homologue to UniRef100_A7PEF0 Cluster: Chromos...   212   4e-54

>gnl|LJGI|AV780998 similar to UniRef100_A7PEF0 Cluster: Chromosome chr11 scaffold_13,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr11 scaffold_13, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (9%)
          Length = 488

 Score =  266 bits (134), Expect = 3e-70
 Identities = 134/134 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1133 tgacatgtatggctgatgctgctctcttcattgctctttcagctgccattgatcttagca 1192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488  tgacatgtatggctgatgctgctctcttcattgctctttcagctgccattgatcttagca 429

                                                                        
Query: 1193 tggatgcttgccagcttttctcacagaaactcaggaaggagctttaccatcatgaagaac 1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428  tggatgcttgccagcttttctcacagaaactcaggaaggagctttaccatcatgaagaac 369

                          
Query: 1253 atgtttcctaatcc 1266
            ||||||||||||||
Sbjct: 368  atgtttcctaatcc 355


>gnl|LJGI|BW603196 homologue to UniRef100_A7PEF0 Cluster: Chromosome chr11
           scaffold_13, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (8%)
          Length = 468

 Score =  212 bits (107), Expect = 4e-54
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatccatgtccctttgtgcgtctcacggtggagtctctggctttgaagcttccggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atggatccatgtccctttgtgcgtctcacggtggagtctctggctttgaagcttccggta 421

                                                          
Query: 61  gcaaccaaaccggcaccggtttccggcgttcacccttcaaccacccc 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gcaaccaaaccggcaccggtttccggcgttcacccttcaaccacccc 468